remove CLOUPE.PREPROCESS call (hard-coded)

        sed -i '/output_for_cloupe/s/CLOUPE_PREPROCESS\.output_for_cloupe/null/g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro 

        sed -i '/output_for_cloupe/s/s/^/#/g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro 

        sed -i '/out cloupe cloupe/ {s/^/#/g}' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro

#remove 11 lines for cloupe preprocess call

for file in $(grep -l  "call CLOUPE_PREPROCES"  /home/tom/local/bin/cellranger-3.0.2/cellranger-cs/3.0.2/mro/*.mro )

do

num=$(grep -n "call CLOUPE_PREPROCESS" $file |  head -n 1 | cut -d":" -f1); num2=$(($num+10)); echo $num $num2

eval "sed '$(echo "${num},${num2}s/^/#/g")' $file" | grep "PREPROCESS"

done

    fi

    echo " ${cellrangerpath} set for $technology"