pull branch into testing environment for GitHub Actions (e245d27d) · Commits · github_fork / Universc

.github/workflows/docker-test-10x.yml

+5 −5

Original line number	Diff line number	Diff line
		@@ -37,13 +37,13 @@ jobs:
		run: echo "hello from universc"
		- name: Call UniverSC from image
		timeout-minutes: 25
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		- name: Call UniverSC from container
		timeout-minutes: 25
		uses: addnab/docker-run-action@v1
		with:
		image: tomkellygenetics/universc:test
		run: timeout 20m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: timeout 20m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

		build:
		runs-on: ubuntu-20.04
		@@ -76,7 +76,7 @@ jobs:
		run: rm -rf *
		- name: Test Cell Ranger
		timeout-minutes: 25
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_cellranger_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_cellranger_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

		test-10x-v2:
		runs-on: ubuntu-20.04
		@@ -100,7 +100,7 @@ jobs:
		run: rm -rf *
		- name: Test 10x
		timeout-minutes: 25
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_v2_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_v2_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

		test-10x:
		runs-on: ubuntu-20.04
		@@ -124,4 +124,4 @@ jobs:
		run: rm -rf *
		- name: Test 10x
		timeout-minutes: 25
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

.github/workflows/docker-test-build.yml

+1 −1

Original line number	Diff line number	Diff line
		@@ -63,5 +63,5 @@ jobs:
		- name: Status
		run: echo "build complete"
		- name: Call functions
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}universc:test git pull --ff-only origin $(git branch --show-current) && bash /universc/test/test_call.sh
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}universc:test git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/test_call.sh

.github/workflows/docker-test-call.yml

+1 −1

Original line number	Diff line number	Diff line
		@@ -85,6 +85,6 @@ jobs:
		- name: Git Status
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test git log --reverse \| tail -n 10
		- name: Pull Updates
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test git pull --ff-only origin $(git branch --show-current)
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test git -C ./universc pull --ff-only origin $(git branch --show-current)
		- name: Git Status
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test git log --reverse \| tail -n 10

.github/workflows/docker-test-dropseq.yml

+1 −1

Original line number	Diff line number	Diff line
		@@ -31,4 +31,4 @@ jobs:
		- name: clear environment
		run: rm -rf *
		- name: Test DropSeq
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_dropseq_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_dropseq_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

.github/workflows/docker-test-indropsv3.yml

+1 −1

Original line number	Diff line number	Diff line
		@@ -31,4 +31,4 @@ jobs:
		- name: clear environment
		run: rm -rf *
		- name: Test inDrops v3
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 30m git pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_indropsv3_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 30m git -C ./universc pull --ff-only origin $(git branch --show-current) && bash /universc/test/run_tests_indropsv3_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

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