remove test data in github actions for disk space (dbadee09) · Commits · github_fork / Universc

.gitattributes

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		@@ -51,17 +51,11 @@ test/shared/indrop-v3-test/Undetermined_S0_L002_R2_001.fastq.gz filter=lfs diff=
		test/shared/indrop-v3-test/Undetermined_S0_L002_R3_001.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L002_R4_001.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L001_R1_001.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L002_R3_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L002_R4_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L001_R1_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L001_R2_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L001_R3_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L001_R4_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L002_R1_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/indrop-v3-test/Undetermined_S0_L002_R2_001.fastq filter=lfs diff=lfs merge=lfs -text
		test/shared/dropseq-test/SRR1873277_Sample1_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/dropseq-test/SRR1873277_Sample1_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/smartseq3-test/Smartseq3_diySpike_I1.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/smartseq3-test/Smartseq3_diySpike_I2.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/smartseq3-test/Smartseq3_diySpike_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/smartseq3-test/Smartseq3_diySpike_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/sciseq-v3-test/SRR7827205_S1_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
		test/shared/sciseq-v3-test/SRR7827205_S1_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text

test/run_tests_10x_gh_actions.sh

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		@@ -14,7 +14,7 @@ cd ../../..
		make -C test/cellranger_reference/cellranger-tiny-ref reference
		rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0

		rm -rf test/shared/dropseq-test/* test/shared/mappa-test/ test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/
		rm -rf test/shared/dropseq-test/* test/shared/mappa-test/ test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test

		# reset barcodes for test
		bash launch_universc.sh -t "10x" --setup

test/run_tests_10x_v2_gh_actions.sh

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		@@ -14,7 +14,7 @@ cd ../../..
		make -C test/cellranger_reference/cellranger-tiny-ref reference
		rm -rf test/cellranger_reference/cellranger-tiny-ref/3.0.0

		rm -rf test/shared/dropseq-test/* test/shared/mappa-test/ test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/
		rm -rf test/shared/dropseq-test/* test/shared/mappa-test/ test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test

		# reset barcodes for test
		bash launch_universc.sh -t "10x" --setup

test/run_tests_cellranger_gh_actions.sh

+1 −1

Original line number	Diff line number	Diff line
		@@ -14,7 +14,7 @@ cd ../../..
		make -C test/cellranger_reference/cellranger-tiny-ref reference
		rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0

		rm -rf test/shared/dropseq-test/* test/shared/mappa-test/ test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/
		rm -rf test/shared/dropseq-test/* test/shared/mappa-test/ test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test

		# reset barcodes for test
		bash launch_universc.sh -t "10x" --setup

test/run_tests_dropseq_gh_actions.sh

+1 −1

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		@@ -17,7 +17,7 @@ cd ../../..
		make -C test/cellranger_reference/cellranger-tiny-ref reference
		rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0

		rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/
		rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test

		# test manual setup
		bash launch_universc.sh -t "nadia" --setup

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