configure tests with GitHub Actions (db3e7ca4) · Commits · github_fork / Universc

.github/workflows/docker-test-10x.yml

+5 −5

Original line number	Diff line number	Diff line
		@@ -36,10 +36,10 @@ jobs:
		image: tomkellygenetics/universc:test
		run: echo "hello from universc"
		- name: Call UniverSC from image
		timeout-minutes: 25
		timeout-minutes: 30
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi
		- name: Call UniverSC from container
		timeout-minutes: 25
		timeout-minutes: 30
		uses: addnab/docker-run-action@v1
		with:
		image: tomkellygenetics/universc:test
		@@ -75,7 +75,7 @@ jobs:
		- name: clear environment
		run: rm -rf *
		- name: Test Cell Ranger
		timeout-minutes: 25
		timeout-minutes: 30
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m bash /universc/test/run_tests_cellranger_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

		test-10x-v2:
		@@ -99,7 +99,7 @@ jobs:
		- name: clear environment
		run: rm -rf *
		- name: Test 10x
		timeout-minutes: 25
		timeout-minutes: 30
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m bash /universc/test/run_tests_10x_v2_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

		test-10x:
		@@ -123,5 +123,5 @@ jobs:
		- name: clear environment
		run: rm -rf *
		- name: Test 10x
		timeout-minutes: 25
		timeout-minutes: 30
		run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test timeout 20m bash /universc/test/run_tests_10x_gh_actions.sh \|\| code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi

.github/workflows/docker-test-build.yml

+4 −2

Original line number	Diff line number	Diff line
		@@ -48,7 +48,8 @@ jobs:
		username: ${{ secrets.DOCKER_HUB_USERNAME }} whoan
		password: "${{ secrets.GITHUB_TOKEN }}"
		registry: docker.pkg.github.com
		image_name: universc:$(date +%s)
		image_name: test
		push: false
		- name: Build from cache
		uses: whoan/docker-build-with-cache-action@v5
		with:
		@@ -56,7 +57,8 @@ jobs:
		password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
		registry: ${{ env.REGISTRY }}
		compose_file: docker-compose.yml
		image_name: universc:$(date +%s)
		image_name: test
		push: false
		- name: Image digest
		run: echo ${{ steps.docker_build.outputs.digest }}
		- name: Status

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