Commit d5f040e3 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

correct setup for barcodes for cellranger version 3.0.2 and 3.1.0

parent cbf88a76
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+6 −0
Original line number Diff line number Diff line
@@ -805,6 +805,9 @@ if [[ $setup == "true" ]]; then
            fi
            zcat nadia_barcode.txt.gz 3M-february-2018.txt.backup.gz | sort | uniq > 3M-february-2018.txt
            gzip -f 3M-february-2018.txt
            if [ -d translation ]; then
                rsync -u 3M-february-2018.txt.gz translation/3M-february-2018.txt.gz
            fi
            echo " whitelist converted for Nadia compatibility with version 3 kit"
        fi
        #if cellranger version is 3 or greater, restore assert functions
@@ -867,6 +870,9 @@ if [[ $setup == "true" ]]; then
            fi
            cat iCell8_barcode.txt > 3M-february-2018.txt
            gzip -f 3M-february-2018.txt
            if [ -d translation ]; then
                rsync -u 3M-february-2018.txt.gz translation/3M-february-2018.txt.gz
            fi
            echo " whitelist converted for iCELL8 compatibility with version 3 kit."        
        fi
        #if cellranger version is 3 or greater, restore assert functions