Loading launch_universc.sh +13 −9 Original line number Diff line number Diff line Loading @@ -2027,15 +2027,7 @@ fi #allow "auto" only for 10x if [[ "$technology" != "10x" ]]; then #use SC3Pv3 (umi length 12) if [[ "$chemistry" != "auto" ]];then #use automatic chemistry detection echo "Detecting 10x chemistry automatically" chemistry="auto" #do not convert UMI umi_default=12 umilength=${umi_default} umiadjust=0 elif [[ $umilength -ge 11 ]]; then if [[ $umilength -ge 11 ]]; then if [[ "$chemistry" == "SC3Pv1" ]] || [[ "$chemistry" == "SC3Pv2" ]]; then echo "Using 10x version 3 chemistry to support longer UMIs" chemistry="SC3Pv3" Loading @@ -2052,6 +2044,18 @@ if [[ "$technology" != "10x" ]]; then exit 1 fi fi if [[ "$technology" == "10x" ]]; then #use SC3Pv3 (umi length 12) if [[ "$chemistry" != "auto" ]];then #use automatic chemistry detection echo "Detecting 10x chemistry automatically" chemistry="auto" #do not convert UMI umi_default=12 umilength=${umi_default} umiadjust=0 fi fi if [[ "$technology" == "smartseq" ]] || [[ "$technology" == "smartseq3" ]] || [[ "$technology" == "icell8-5-prime" ]]; then if [[ $verbose ]]; then echo " Using $chemistry for $technology" Loading Loading
launch_universc.sh +13 −9 Original line number Diff line number Diff line Loading @@ -2027,15 +2027,7 @@ fi #allow "auto" only for 10x if [[ "$technology" != "10x" ]]; then #use SC3Pv3 (umi length 12) if [[ "$chemistry" != "auto" ]];then #use automatic chemistry detection echo "Detecting 10x chemistry automatically" chemistry="auto" #do not convert UMI umi_default=12 umilength=${umi_default} umiadjust=0 elif [[ $umilength -ge 11 ]]; then if [[ $umilength -ge 11 ]]; then if [[ "$chemistry" == "SC3Pv1" ]] || [[ "$chemistry" == "SC3Pv2" ]]; then echo "Using 10x version 3 chemistry to support longer UMIs" chemistry="SC3Pv3" Loading @@ -2052,6 +2044,18 @@ if [[ "$technology" != "10x" ]]; then exit 1 fi fi if [[ "$technology" == "10x" ]]; then #use SC3Pv3 (umi length 12) if [[ "$chemistry" != "auto" ]];then #use automatic chemistry detection echo "Detecting 10x chemistry automatically" chemistry="auto" #do not convert UMI umi_default=12 umilength=${umi_default} umiadjust=0 fi fi if [[ "$technology" == "smartseq" ]] || [[ "$technology" == "smartseq3" ]] || [[ "$technology" == "icell8-5-prime" ]]; then if [[ $verbose ]]; then echo " Using $chemistry for $technology" Loading
