correct docs (d09a2773) · Commits · github_fork / Universc

launch_universc.sh

+3 −3

Original line number	Diff line number	Diff line
		@@ -9,9 +9,9 @@ if [[ -z $cellrangerpass ]]; then
		fi
		ver_info=`paste -d "\n" <(cellranger count --version) <(echo conversion script version 0.1) \| head -n 3 \| tail -n 2`
		help="Usage: bash $(basename "$0") -R1=FILE1 -R2=FILE2 -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -R1="READ1_LANE1 READ1_LANE2" -R2="READ2_LANE1 READ2_LANE2" -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -f="SAMPLE_LANE" -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -f="SAMPLE_LANE1 SAMPLE_LANE2" -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -R1=\"READ1_LANE1 READ1_LANE2\" -R2=\"READ2_LANE1 READ2_LANE2\" -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -f=\"SAMPLE_LANE\" -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -f=\"SAMPLE_LANE1 SAMPLE_LANE2\" -t=TECHNOLOGY -i=ID -r=REFERENCE [--option=OPT]
		bash $(basename "$0") -v
		bash $(basename "$0") -h
		bash $(basename "$0") -t=TECHNOLOGY --setup