Commit bd4e522f authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

run GitHub actions on GitHub packages not DockerHub

parent 35d97fc7

.github/workflows/docker-run.yml

+1 −1
Original line number Diff line number Diff line
@@ -4,7 +4,7 @@ jobs: 
  test:

    runs-on: ubuntu-20.04

    container:

      image: tomkellygenetics/cellranger_clean:3.0.2

      image: docker.pkg.github.com/tomkellygenetics/cellranger_clean/cellranger_clean:latest

    steps:

      - uses: actions/checkout@v2

      - name: Build the stack

.github/workflows/docker-test-10x.yml

+2 −2
Original line number Diff line number Diff line
@@ -29,14 +29,14 @@ jobs: 
        tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:latest

        push: false

    - name: Run image

      run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w tomkellygenetics/universc:1.0.2 echo "hello from universc"

      run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w docker.pkg.github.com/minoda-lab/universc/universc:latest echo "hello from universc"

    - name: Call UniverSC

      uses: addnab/docker-run-action@v1

      with:

        image: tomkellygenetics/universc:latest

        run: bash /universc/test/test_call.sh

    - name: Run image

      run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w tomkellygenetics/universc:1.0.2 bash /universc/test/run_tests_10x.sh

      run: docker run -it -d --name builder -v $GITHUB_WORKSPACE:/workspace -w docker.pkg.github.com/minoda-lab/universc/universc:latest bash /universc/test/run_tests_10x.sh

    - name: Call UniverSC

      uses: addnab/docker-run-action@v1

      with:

.github/workflows/docker-test-call.yml

+2 −2
Original line number Diff line number Diff line
@@ -19,7 +19,7 @@ jobs: 
  test-cellranger:

    runs-on: ubuntu-latest

    container:

      image: tomkellygenetics/cellranger_clean:3.0.2

      image: docker.pkg.github.com/tomkellygenetics/cellranger_clean/cellranger_clean:latest

    steps:  

      - uses: actions/checkout@v2

      - name: What OS is running
@@ -32,7 +32,7 @@ jobs: 
  test-universc:

    runs-on: ubuntu-latest

    container:

      image: tomkellygenetics/universc:1.0.2

      image: docker.pkg.github.com/minoda-lab/universc/universc:latest

    steps:

      - uses: actions/checkout@v2

      - name: What OS is running

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