Loading launch_universc.sh +4 −4 Original line number Diff line number Diff line Loading @@ -761,7 +761,7 @@ if [ -d $crIN ] then echo "warning: converted $read file already exists" fi if [[ ! $keep ]] if [[ $keep == "false" ]] then echo "file $crIN/$read removed" rm -rf $crIN/$read Loading @@ -776,7 +776,7 @@ if [ -d $crIN ] then echo "warning: converted $read file already exists" fi if [[ ! $keep ]] if [[ $keep == "false" ]] then echo "file $crIN/$read removed" rm -rf $crIN/$read Loading @@ -796,7 +796,7 @@ for fq in "${read1[@]}"; do if [[ $fq == *'.gz' ]]; then echo " unzipping and redirecting $fq file..." gunzip -c $fq > $to elif [[ ! $keep ]] elif [[ $keep == "false" ]] then echo " redirecting $fq file..." cp $fq $to Loading @@ -823,7 +823,7 @@ for fq in "${read2[@]}"; do if [[ $fq == *'.gz' ]]; then echo " unzipping and redirecting $fq file..." gunzip -c $fq > $to elif [[ ! $keep ]] elif [[ $keep == "false" ]] then echo " redirecting $fq file..." cp $fq $to Loading Loading
launch_universc.sh +4 −4 Original line number Diff line number Diff line Loading @@ -761,7 +761,7 @@ if [ -d $crIN ] then echo "warning: converted $read file already exists" fi if [[ ! $keep ]] if [[ $keep == "false" ]] then echo "file $crIN/$read removed" rm -rf $crIN/$read Loading @@ -776,7 +776,7 @@ if [ -d $crIN ] then echo "warning: converted $read file already exists" fi if [[ ! $keep ]] if [[ $keep == "false" ]] then echo "file $crIN/$read removed" rm -rf $crIN/$read Loading @@ -796,7 +796,7 @@ for fq in "${read1[@]}"; do if [[ $fq == *'.gz' ]]; then echo " unzipping and redirecting $fq file..." gunzip -c $fq > $to elif [[ ! $keep ]] elif [[ $keep == "false" ]] then echo " redirecting $fq file..." cp $fq $to Loading @@ -823,7 +823,7 @@ for fq in "${read2[@]}"; do if [[ $fq == *'.gz' ]]; then echo " unzipping and redirecting $fq file..." gunzip -c $fq > $to elif [[ ! $keep ]] elif [[ $keep == "false" ]] then echo " redirecting $fq file..." cp $fq $to Loading
