Loading launch_universc.sh +3 −2 Original line number Diff line number Diff line Loading @@ -1172,8 +1172,9 @@ if [[ $verbose ]]; then fi for key in ${keys[@]}; do if [[ $verbose ]]; then readkey=$key echo "key: $key" fi readkey=$key list=() if [[ $readkey == "R1" ]]; then list=("${read1[@]}") Loading test/shared/smartseq3-test/prepare_files.sh +1 −1 Original line number Diff line number Diff line Loading @@ -2,7 +2,7 @@ wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts. wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts.GelCut.R2.fastq.gz wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts.GelCut.I1.fastq.gz wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts.GelCut.I2.fastq.gz rename "s/Smartseq3.Fibroblasts.GelCut./Smartseq3_Fibroblasts_GelCut_/g" FSmartseq3.Fibroblasts.GelCut.*fastq.gz rename "s/Smartseq3.Fibroblasts.GelCut./Smartseq3_Fibroblasts_GelCut_/g" Smartseq3.Fibroblasts.GelCut.*fastq.gz #create bowtie index bowtie2-build ../../test/cellranger_reference/cellranger-tiny-ref/3.0.0/fasta/genome.fa ../../test/cellranger_reference/cellranger-tiny-ref/3.0.0/fasta/genome Loading Loading
launch_universc.sh +3 −2 Original line number Diff line number Diff line Loading @@ -1172,8 +1172,9 @@ if [[ $verbose ]]; then fi for key in ${keys[@]}; do if [[ $verbose ]]; then readkey=$key echo "key: $key" fi readkey=$key list=() if [[ $readkey == "R1" ]]; then list=("${read1[@]}") Loading
test/shared/smartseq3-test/prepare_files.sh +1 −1 Original line number Diff line number Diff line Loading @@ -2,7 +2,7 @@ wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts. wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts.GelCut.R2.fastq.gz wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts.GelCut.I1.fastq.gz wget https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-8735/Smartseq3.Fibroblasts.GelCut.I2.fastq.gz rename "s/Smartseq3.Fibroblasts.GelCut./Smartseq3_Fibroblasts_GelCut_/g" FSmartseq3.Fibroblasts.GelCut.*fastq.gz rename "s/Smartseq3.Fibroblasts.GelCut./Smartseq3_Fibroblasts_GelCut_/g" Smartseq3.Fibroblasts.GelCut.*fastq.gz #create bowtie index bowtie2-build ../../test/cellranger_reference/cellranger-tiny-ref/3.0.0/fasta/genome.fa ../../test/cellranger_reference/cellranger-tiny-ref/3.0.0/fasta/genome Loading
