Add information on nextflow (8d94b1a7) · Commits · github_fork / Universc

README.md

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		@@ -136,6 +136,18 @@ Once you have a docker image installed on your system, you can run the applicabl

		[https://genomec.gsc.riken.jp/gerg/UniverSC/UniverSC_app_release/](https://genomec.gsc.riken.jp/gerg/UniverSC/UniverSC_app_release/)

		### Nextflow users

		A [nextflow](https://www.nextflow.io/) custom [module](https://nf-co.re/modules) is being developed for the [nf-core](https://nf-co.re) community. It will be available to use in nf-core [pipelines](https://nf-co.re/pipelines).

		See the issue and pull request for details:

		https://github.com/nf-core/modules/issues/1644

		https://github.com/nf-core/modules/pull/1706

		We plan to make this available in the near future. If you are interested in using it or contributing to development, please contact the maintainers. Thank you!

		## Purpose

		We've developed a bash script that will run Cell Ranger on FASTQ files for these technologies. See below for details on how to use it.