allow longer Nadia barcodes (87864ec8) · Commits · github_fork / Universc

launch_universc.sh

+2 −2

Original line number	Original line	Diff line number	Diff line
	@@ -960,9 +960,9 @@ elif [[ $convert == "true" ]]; then
	echo " converting quality scores"		echo " converting quality scores"
	sed -i '4~4s/^/IIII/' $convFile #Add quality scores for added bases		sed -i '4~4s/^/IIII/' $convFile #Add quality scores for added bases
	echo " converting UMI"		echo " converting UMI"
	sed -i '2~4s/[NATCG][NATCG][NATCG][NATCG][NATCG][NATCG]$/AA/' $convFile #Replace last 6 bases with AA		sed -i '2~4s/[NATCG][NATCG][NATCG][NATCG]$//' $convFile #Remove last 4 bases
	echo " converting quality scores"		echo " converting quality scores"
	sed -i '4~4s/......$/II/' $convFile #Replace quality scores for added bases		sed -i '4~4s/....$//' $convFile #Replace quality scores for last 4 bases
	elif [[ "$technology" == "icell8" ]]; then		elif [[ "$technology" == "icell8" ]]; then
	echo " converting barcodes"		echo " converting barcodes"
	sed -i '2~4s/^/AAAAA/' $convFile #Add AAAAA to every read		sed -i '2~4s/^/AAAAA/' $convFile #Add AAAAA to every read