Loading README.Rmd +11 −1 Original line number Diff line number Diff line Loading @@ -923,7 +923,17 @@ bash universc/launch_universc.sh --id "test-dropseq" --technology "nadia" \ #### Running launch_universc.sh on ICELL8 data - add example running on custom barcode whitelist ``` # call on icell8 files with custom whitelist and non-standard file names bash launch_universc.sh --setup -t "icell8" --barcodefile "test/shared/icell8-test/BarcodeList.txt" bash launch_universc.sh --id "test-icell8-custom" --technology "iCell8" \ --reference "test/cellranger_reference/cellranger-tiny-ref/3.0.0" \ --read1 "test/shared/icell8-test/iCELL8_01_S1_L001_R1_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R1_001.fastq" \ --read2 "test/shared/icell8-test/iCELL8_01_S1_L001_R2_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/BarcodeList.txt" \ --jobmode "sge" ``` ## Licensing Loading README.html +70 −278 File changed.Preview size limit exceeded, changes collapsed. Show changes README.md +13 −3 Original line number Diff line number Diff line Loading @@ -6,7 +6,7 @@ affiliations: index: 1 - name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan" index: 2 date: "Thursday 09 July 2020" date: "Sunday 12 July 2020" output: prettydoc::html_pretty: theme: cayman Loading Loading @@ -923,7 +923,17 @@ bash universc/launch_universc.sh --id "test-dropseq" --technology "nadia" \ #### Running launch_universc.sh on ICELL8 data - add example running on custom barcode whitelist ``` # call on icell8 files with custom whitelist and non-standard file names bash launch_universc.sh --setup -t "icell8" --barcodefile "test/shared/icell8-test/BarcodeList.txt" bash launch_universc.sh --id "test-icell8-custom" --technology "iCell8" \ --reference "test/cellranger_reference/cellranger-tiny-ref/3.0.0" \ --read1 "test/shared/icell8-test/iCELL8_01_S1_L001_R1_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R1_001.fastq" \ --read2 "test/shared/icell8-test/iCELL8_01_S1_L001_R2_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/BarcodeList.txt" \ --jobmode "sge" ``` ## Licensing Loading Loading
README.Rmd +11 −1 Original line number Diff line number Diff line Loading @@ -923,7 +923,17 @@ bash universc/launch_universc.sh --id "test-dropseq" --technology "nadia" \ #### Running launch_universc.sh on ICELL8 data - add example running on custom barcode whitelist ``` # call on icell8 files with custom whitelist and non-standard file names bash launch_universc.sh --setup -t "icell8" --barcodefile "test/shared/icell8-test/BarcodeList.txt" bash launch_universc.sh --id "test-icell8-custom" --technology "iCell8" \ --reference "test/cellranger_reference/cellranger-tiny-ref/3.0.0" \ --read1 "test/shared/icell8-test/iCELL8_01_S1_L001_R1_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R1_001.fastq" \ --read2 "test/shared/icell8-test/iCELL8_01_S1_L001_R2_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/BarcodeList.txt" \ --jobmode "sge" ``` ## Licensing Loading
README.md +13 −3 Original line number Diff line number Diff line Loading @@ -6,7 +6,7 @@ affiliations: index: 1 - name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan" index: 2 date: "Thursday 09 July 2020" date: "Sunday 12 July 2020" output: prettydoc::html_pretty: theme: cayman Loading Loading @@ -923,7 +923,17 @@ bash universc/launch_universc.sh --id "test-dropseq" --technology "nadia" \ #### Running launch_universc.sh on ICELL8 data - add example running on custom barcode whitelist ``` # call on icell8 files with custom whitelist and non-standard file names bash launch_universc.sh --setup -t "icell8" --barcodefile "test/shared/icell8-test/BarcodeList.txt" bash launch_universc.sh --id "test-icell8-custom" --technology "iCell8" \ --reference "test/cellranger_reference/cellranger-tiny-ref/3.0.0" \ --read1 "test/shared/icell8-test/iCELL8_01_S1_L001_R1_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R1_001.fastq" \ --read2 "test/shared/icell8-test/iCELL8_01_S1_L001_R2_001.fastq" "test/shared/icell8-test/iCELL8_01_S1_L002_R2_001.fastq" \ --barcodefile "test/shared/icell8-test/BarcodeList.txt" \ --jobmode "sge" ``` ## Licensing Loading
