set up install and removal of manual with make

#

all: reference

clean: reference-clean

clean: reference-clean manual-clean

# Targets for python builds

	rm -Rf  test/cellranger_reference/cellranger-tiny-ref/3.0.0

	rm -Rf  test/cellranger_reference/cellranger-tiny-ref/1.2.0

# Copy to manuals (requires root priviledges

manual:

	bash man/INSTALL

.PHONY: print_vars

print_vars: manual

	echo $(CONFIG)	

manual-clean:

	bash man/REMOVE

#! /bin/sh

# add manual directory to PATH if not already found

## check config for Linux

if [[ -f /etc/manpath.config ]]

    then CONFIG="/etc/manpath.config"

fi

## check config for Mac

if [[ -f /etc/manpaths ]]

    then CONFIG="/etc/manpaths"

fi

if [[ ! -z $CONFIG ]]

    then MANDIR=`tail -n 1 ${CONFIG}`

else if [[ ! -z $MANPATH ]]

    then

    SHELL_RC=`echo ~/.${0}rc`

    echo "export MANPATH=/usr/local/man" >> $SHELL_RC

    MANDIR=`echo ${MANPATH} | cut -d: -f1`

    fi

fi

if [[ -f  man/launch_universc.sh.1 ]]

    then

    rm man/launch_universc.sh.1

fi

if [[ -f ${MANDIR}/man1/launch_universc.sh.1 ]]

    then

    rm ${MANDIR}/man1/launch_universc.sh.1

fi

if [[ -f ${MANDIR}/man1/launch_universc.sh.1.gz ]] 

    then

    rm ${MANDIR}/man1/launch_universc.sh.1.gz

fi