Loading launch_universc.sh +14 −0 Original line number Diff line number Diff line Loading @@ -1617,7 +1617,16 @@ if [[ $lock -eq 0 ]]; then sed -i "s/assert np.array_equal(in_mc.get_barcodes(), barcodes)/#assert np.array_equal(in_mc.get_barcodes(), barcodes)/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/molecule_counter.py fi fi #backup 10x navbar if [[ ! -f ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ]];then cp ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html cp ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.temp.html fi if [[ $technology == "10x" ]] && [[ $barcodefile == "default:10x" ]]; then #restore logo in HTML template if [[ -f ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ]];then cp ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html fi #restore cloupe generation if [[ $verbose ]]; then echo "restore cloupe" Loading Loading @@ -1654,6 +1663,11 @@ if [[ $lock -eq 0 ]]; then eval "sed -i '$(echo "${num},${num2}s/^#*#//g")' $file" done elif [[ $lastcall_p == "default:10x" ]] || [[ ! -f $lastcallfile ]]; then #remove logo from HTML template if [[ -f ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ]];then #line of HTML in header is removed sed '/class="logo"/d' ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html > ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html fi #disable cloupe generation if [[ $verbose ]]; then echo "disable cloupe" Loading Loading
launch_universc.sh +14 −0 Original line number Diff line number Diff line Loading @@ -1617,7 +1617,16 @@ if [[ $lock -eq 0 ]]; then sed -i "s/assert np.array_equal(in_mc.get_barcodes(), barcodes)/#assert np.array_equal(in_mc.get_barcodes(), barcodes)/g" ${cellrangerpath}-cs/${cellrangerversion}/lib/python/cellranger/molecule_counter.py fi fi #backup 10x navbar if [[ ! -f ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ]];then cp ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html cp ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.temp.html fi if [[ $technology == "10x" ]] && [[ $barcodefile == "default:10x" ]]; then #restore logo in HTML template if [[ -f ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ]];then cp ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html fi #restore cloupe generation if [[ $verbose ]]; then echo "restore cloupe" Loading Loading @@ -1654,6 +1663,11 @@ if [[ $lock -eq 0 ]]; then eval "sed -i '$(echo "${num},${num2}s/^#*#//g")' $file" done elif [[ $lastcall_p == "default:10x" ]] || [[ ! -f $lastcallfile ]]; then #remove logo from HTML template if [[ -f ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html ]];then #line of HTML in header is removed sed '/class="logo"/d' ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.backup.html > ${cellrangerpath}-cs/${cellrangerversion}lib/python/cellranger/webshim/template/navbar.html fi #disable cloupe generation if [[ $verbose ]]; then echo "disable cloupe" Loading
