Commit 7b6bb534 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

correct script

parent 32c3cd71
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+1 −1
Original line number Diff line number Diff line
@@ -781,7 +781,7 @@ else
    elif [[ "$technology" == "indrop-v1" ]] || [[ "$technology" == "indrop-v2" ]]; then
        # use bustools whitelist for inDrops-v2 with adapters removed https://github.com/BUStools/bustools/issues/4 
        barcodefile=${SDIR}/inDrops_barcodes.txt
    elif [[ "$technology" == "indrop-v3" ]];
    elif [[ "$technology" == "indrop-v3" ]]; then
        # inDrops-v3 whitelist is a combination of v2 whitelists https://github.com/indrops/indrops/issues/32
        ## version 2 whitelist will be used until dual indexing (i7) is supported for read I2: https://github.com/alexdobin/STAR/issues/825
        barcodefile=${SDIR}/inDrops-v2_barcodes.txt