Loading launch_universc.sh +12 −12 Original line number Diff line number Diff line Loading @@ -382,12 +382,12 @@ for i in ${!read1[@]}; do fi case $read in #check if contains lane before read (*_L0[0123456789][0123456789]_R[12]*) *_L0[0123456789][0123456789]_R[12]*) if [[ $verbose == "true" ]]; then echo " $read compatible with lane" fi ;; (*) echo " converting $read ..." *) echo " converting $read ..." #rename file if [[ $verbose == "true" ]]; then echo " assuming 1 lane if not given" Loading @@ -403,12 +403,12 @@ for i in ${!read1[@]}; do esac case $read in #check if contains sample before lane (*_S[123456789]_L0*) *_S[123456789]_L0*) if [[ $verbose == "true" ]]; then echo " $read compatible with sample" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading @@ -425,12 +425,12 @@ for i in ${!read1[@]}; do esac case $read in #check if contains sample before lane (*_R1_001.*) *_R1_001.*) if [[ $verbose == "true" ]]; then echo " $read compatible with suffix" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading Loading @@ -461,12 +461,12 @@ for i in ${!read2[@]}; do fi case $read in #check if contains lane before read (*_L0[0123456789][0123456789]_R[12]*) *_L0[0123456789][0123456789]_R[12]*) if [[ $verbose == "true" ]]; then echo " $read compatible with lane" fi ;; (*) echo " converting $read ..." *) echo " converting $read ..." #rename file if [[ $verbose == "true" ]]; then echo " assuming 1 lane if not given" Loading @@ -482,12 +482,12 @@ for i in ${!read2[@]}; do esac case $read in #check if contains sample before lane (*_S[123456789]_L0*) *_S[123456789]_L0*) if [[ $verbose == "true" ]]; then echo " $read compatible with sample" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading @@ -504,12 +504,12 @@ for i in ${!read2[@]}; do esac case $read in #check if contains sample before lane (*_R2_001.*) *_R2_001.*) if [[ $verbose == "true" ]]; then echo " $read compatible with suffix" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading Loading
launch_universc.sh +12 −12 Original line number Diff line number Diff line Loading @@ -382,12 +382,12 @@ for i in ${!read1[@]}; do fi case $read in #check if contains lane before read (*_L0[0123456789][0123456789]_R[12]*) *_L0[0123456789][0123456789]_R[12]*) if [[ $verbose == "true" ]]; then echo " $read compatible with lane" fi ;; (*) echo " converting $read ..." *) echo " converting $read ..." #rename file if [[ $verbose == "true" ]]; then echo " assuming 1 lane if not given" Loading @@ -403,12 +403,12 @@ for i in ${!read1[@]}; do esac case $read in #check if contains sample before lane (*_S[123456789]_L0*) *_S[123456789]_L0*) if [[ $verbose == "true" ]]; then echo " $read compatible with sample" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading @@ -425,12 +425,12 @@ for i in ${!read1[@]}; do esac case $read in #check if contains sample before lane (*_R1_001.*) *_R1_001.*) if [[ $verbose == "true" ]]; then echo " $read compatible with suffix" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading Loading @@ -461,12 +461,12 @@ for i in ${!read2[@]}; do fi case $read in #check if contains lane before read (*_L0[0123456789][0123456789]_R[12]*) *_L0[0123456789][0123456789]_R[12]*) if [[ $verbose == "true" ]]; then echo " $read compatible with lane" fi ;; (*) echo " converting $read ..." *) echo " converting $read ..." #rename file if [[ $verbose == "true" ]]; then echo " assuming 1 lane if not given" Loading @@ -482,12 +482,12 @@ for i in ${!read2[@]}; do esac case $read in #check if contains sample before lane (*_S[123456789]_L0*) *_S[123456789]_L0*) if [[ $verbose == "true" ]]; then echo " $read compatible with sample" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading @@ -504,12 +504,12 @@ for i in ${!read2[@]}; do esac case $read in #check if contains sample before lane (*_R2_001.*) *_R2_001.*) if [[ $verbose == "true" ]]; then echo " $read compatible with suffix" fi ;; (*) *) if [[ $verbose == "true" ]]; then echo " converting $read ..." fi Loading
