Commit 722cca47 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

update source code in container before testing on GitHub Actions

parent b086d8ea
Loading
Loading
Loading
Loading
+1 −0
Original line number Diff line number Diff line
@@ -3,6 +3,7 @@
# run tests in universc directory (parent of test directory)
cd $(dirname ${BASH_SOURCE[0]})/..
pwd
git pull origin master

cellrangerversion=`cellranger count --version | head -n 2 | tail -n 1 | cut -f2 -d'(' | cut -f1 -d')'`
cellrangerpath=`which cellranger`
+1 −0
Original line number Diff line number Diff line
@@ -3,6 +3,7 @@
# run tests in universc directory (parent of test directory)
cd $(dirname ${BASH_SOURCE[0]})/..
pwd
git pull origin master

cellrangerversion=`cellranger count --version | head -n 2 | tail -n 1 | cut -f2 -d'(' | cut -f1 -d')'`
cellrangerpath=`which cellranger`
+1 −0
Original line number Diff line number Diff line
@@ -3,6 +3,7 @@
# run tests in universc directory (parent of test directory)
cd $(dirname ${BASH_SOURCE[0]})/..
pwd
git pull origin master

cellrangerversion=`cellranger count --version | head -n 2 | tail -n 1 | cut -f2 -d'(' | cut -f1 -d')'`
cellrangerpath=`which cellranger`
+1 −0
Original line number Diff line number Diff line
@@ -3,6 +3,7 @@
# run tests in universc directory (parent of test directory)
cd $(dirname ${BASH_SOURCE[0]})/..
pwd
git pull origin master

# used to export to PATH for testing on SGE server
export PATH=${HOME}/local/bin/cellranger-3.0.2:$PATH
+1 −0
Original line number Diff line number Diff line
@@ -3,6 +3,7 @@
# run tests in universc directory (parent of test directory)
cd $(dirname ${BASH_SOURCE[0]})/..
pwd
git pull origin master

# used to export to PATH for testing on SGE server
export PATH=${HOME}/local/bin/cellranger-3.0.2:$PATH
Loading