Only remove Cloupe file if not 10x

#####process output#####

cloupefile=${SDIR}/${id}/outs/cloupe.cloupe

if [[ $technology != "10x" ]]; then

    echo "Removing file ${cloupefile}"

    if [[ -f $cloupefile ]]; then

        rm -rf $cloupefile

    fi

echo "Cloupe file cannot be computed"

    echo "***Notice: Cloupe file cannot be computed for $technology"

    echo "           Cloupe files generated by this pipeline are corrupt"

    echo "           and cannot be read by the 10x Genomics Loupe Browser."

    echo "           We do not provide support for Cloupe files as this"

    echo "           requires software from 10x Genomics subject to their"

    echo "           End User License Agreement."

    echo "           Cloupe files are disabled in compliance with this."

fi

##########