Commit 673cc990 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

set up test jobs for SCI-Seq v3

parent b2e32a92

.gitattributes

+2 −0
Original line number Diff line number Diff line
@@ -57,3 +57,5 @@ test/shared/smartseq3-test/Smartseq3_diySpike_I1.fastq.gz filter=lfs diff=lfs me 
test/shared/smartseq3-test/Smartseq3_diySpike_I2.fastq.gz filter=lfs diff=lfs merge=lfs -text

test/shared/smartseq3-test/Smartseq3_diySpike_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text

test/shared/smartseq3-test/Smartseq3_diySpike_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text

test/shared/sciseq-v3-test/SRR7827205_S1_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text

test/shared/sciseq-v3-test/SRR7827205_S1_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text

test/run_tests_10x_gh_actions.sh

+1 −1
Original line number Diff line number Diff line
@@ -14,7 +14,7 @@ cd ../../.. 
make -C test/cellranger_reference/cellranger-tiny-ref reference 

rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0



rm -rf  test/shared/dropseq-test/* test/shared/mappa-test/  test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/

rm -rf  test/shared/dropseq-test/* test/shared/mappa-test/  test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test



# reset barcodes for test

bash launch_universc.sh -t "10x" --setup

test/run_tests_10x_v2_gh_actions.sh

+1 −1
Original line number Diff line number Diff line
@@ -14,7 +14,7 @@ cd ../../.. 
make -C test/cellranger_reference/cellranger-tiny-ref reference 

rm -rf test/cellranger_reference/cellranger-tiny-ref/3.0.0



rm -rf  test/shared/dropseq-test/* test/shared/mappa-test/  test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/

rm -rf  test/shared/dropseq-test/* test/shared/mappa-test/  test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test



# reset barcodes for test

bash launch_universc.sh -t "10x" --setup

test/run_tests_cellranger_gh_actions.sh

+1 −1
Original line number Diff line number Diff line
@@ -14,7 +14,7 @@ cd ../../.. 
make -C test/cellranger_reference/cellranger-tiny-ref reference 

rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0



rm -rf  test/shared/dropseq-test/* test/shared/mappa-test/  test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/

rm -rf  test/shared/dropseq-test/* test/shared/mappa-test/  test/shared/icell8-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test



# reset barcodes for test

bash launch_universc.sh -t "10x" --setup

test/run_tests_dropseq_gh_actions.sh

+1 −1
Original line number Diff line number Diff line
@@ -17,7 +17,7 @@ cd ../../.. 
make -C test/cellranger_reference/cellranger-tiny-ref reference 

rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0



rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/

rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test



# test manual setup

bash launch_universc.sh -t "nadia" --setup

CRA Git | Maintained and supported by SUSTech CRA and CCSE