rename repository (644aaa10) · Commits · github_fork / Universc

Dockerfile

+9 −9

Original line number	Diff line number	Diff line
		@@ -16,26 +16,26 @@ RUN apt-get install -y \
		nano \
		&& sh -c "$(curl -fsSL https://raw.github.com/ohmyzsh/ohmyzsh/master/tools/install.sh) --unattended"

		RUN git clone "https://github.com/TomKellyGenetics/cellranger_convert.git"
		RUN git clone "https://github.com/TomKellyGenetics/universc.git"

		RUN cd cellranger_convert/test/cellranger_reference/cellranger-tiny-ref/ \
		RUN cd universc/test/cellranger_reference/cellranger-tiny-ref/ \
		&& git lfs pull

		RUN cd cellranger_convert \
		RUN cd universc \
		&& make reference \
		&& cd ..

		RUN mkdir -p /cellranger-3.0.2.9001/cellranger-tiny-fastq \
		&& ln -s /cellranger_convert/test/shared/cellranger-tiny-fastq/1.2.0 /cellranger-3.0.2.9001/cellranger-tiny-fastq \
		&& ln -s /cellranger_convert/test/shared/cellranger-tiny-fastq/3.0.0 /cellranger-3.0.2.9001/cellranger-tiny-fastq
		&& ln -s /universc/test/shared/cellranger-tiny-fastq/1.2.0 /cellranger-3.0.2.9001/cellranger-tiny-fastq \
		&& ln -s /universc/test/shared/cellranger-tiny-fastq/3.0.0 /cellranger-3.0.2.9001/cellranger-tiny-fastq

		RUN mkdir -p /cellranger-3.0.2.9001/cellranger-tiny-ref \
		&& ln -s /cellranger_convert/test/cellranger_reference/cellranger-tiny-ref/1.2.0 /cellranger-3.0.2.9001/cellranger-tiny-ref \
		&& ln -s /cellranger_convert/test/cellranger_reference/cellranger-tiny-ref/3.0.0 /cellranger-3.0.2.9001/cellranger-tiny-ref
		&& ln -s /universc/test/cellranger_reference/cellranger-tiny-ref/1.2.0 /cellranger-3.0.2.9001/cellranger-tiny-ref \
		&& ln -s /universc/test/cellranger_reference/cellranger-tiny-ref/3.0.0 /cellranger-3.0.2.9001/cellranger-tiny-ref

		ENV PATH cellranger_convert:$PATH
		ENV PATH universc:$PATH

		RUN ln -s /cellranger_convert/launch_universc.sh /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/universc
		RUN ln -s /universc/launch_universc.sh /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/bin/universc

		ENV LC_ALL C.UTF-8
		ENV LANG C.UTF-8

LICENSE

+6 −5

Original line number	Diff line number	Diff line
		@@ -631,8 +631,8 @@ to attach them to the start of each source file to most effectively
		state the exclusion of warranty; and each file should have at least
		the "copyright" line and a pointer to where the full notice is found.

		cellranger_convert
		Copyright (C) 2019 Tom Kelly
		UniverSC
		Copyright (C) 2019 Tom Kelly; Kai Battenberg

		This program is free software: you can redistribute it and/or modify
		it under the terms of the GNU General Public License as published by
		@@ -652,10 +652,11 @@ Also add information on how to contact you by electronic and paper mail.
		If the program does terminal interaction, make it output a short
		notice like this when it starts in an interactive mode:

		cellranger_convert Copyright (C) 2019 Tom Kelly
		This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
		UniverSC Copyright (C) 2019 Tom Kelly; Kai Battenberg

		This program comes with ABSOLUTELY NO WARRANTY; for details type `cat LICENSE'.
		This is free software, and you are welcome to redistribute it
		under certain conditions; type `show c' for details.
		under certain conditions; type `cat LICENSE' for details.

		The hypothetical commands `show w' and `show c' should show the appropriate
		parts of the General Public License. Of course, your program's commands

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