Loading launch_universc.sh +22 −0 Original line number Diff line number Diff line Loading @@ -568,6 +568,17 @@ case $read in read1[$i]=$read echo " renaming $read ...";; esac case $read in #check if contains sample before lane (*_R1_001.*) echo " $read compatible with suffix";; (*) echo " converting $read ..." #rename file rename "s/_R1.*\./_R1_001\./" $read #update file variable read=`echo $read | sed -e "s/_R1.*\./_R1_001\./g"` read1[$i]=$read echo " renaming $read";; esac done echo " checking file name for $read2 ..." Loading Loading @@ -598,6 +609,17 @@ case $read in read2[$i]=$read echo " renaming $read ...";; esac case $read in #check if contains sample before lane (*_R1_001.*) echo " $read compatible with suffix";; (*) echo " converting $read ..." #rename file rename "s/_R1.*\./_R1_001\./" $read #update file variable read=`echo $read | sed -e "s/_R1.*\./_R1_001\./g"` read1[$i]=$read echo " renaming $read";; esac done echo " files: ${read1[@]} \(Read1\)" Loading Loading
launch_universc.sh +22 −0 Original line number Diff line number Diff line Loading @@ -568,6 +568,17 @@ case $read in read1[$i]=$read echo " renaming $read ...";; esac case $read in #check if contains sample before lane (*_R1_001.*) echo " $read compatible with suffix";; (*) echo " converting $read ..." #rename file rename "s/_R1.*\./_R1_001\./" $read #update file variable read=`echo $read | sed -e "s/_R1.*\./_R1_001\./g"` read1[$i]=$read echo " renaming $read";; esac done echo " checking file name for $read2 ..." Loading Loading @@ -598,6 +609,17 @@ case $read in read2[$i]=$read echo " renaming $read ...";; esac case $read in #check if contains sample before lane (*_R1_001.*) echo " $read compatible with suffix";; (*) echo " converting $read ..." #rename file rename "s/_R1.*\./_R1_001\./" $read #update file variable read=`echo $read | sed -e "s/_R1.*\./_R1_001\./g"` read1[$i]=$read echo " renaming $read";; esac done echo " files: ${read1[@]} \(Read1\)" Loading
