no cloupe output listed (null) (5a0d6848) · Commits · github_fork / Universc

launch_universc.sh

+4 −2

Original line number	Diff line number	Diff line
		@@ -1559,6 +1559,7 @@ if [[ $lock -eq 0 ]]; then
		fi
		sed -i '/output_for_cloupe/s/^##//g' ${cellrangerpath}-cs/${cellrangerversion}/mro/mro
		sed -i '/out cloupe cloupe/ {s/^##//g}' ${cellrangerpath}-cs/${cellrangerversion}/mro/mro
		sed -i '/output_for_cloupe/s/null/CLOUPE_PREPROCESS.output_for_cloupe/g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
		elif [[ $lastcall_p == "default:10x" ]] \|\| [[ ! -f $lastcallfile ]]; then
		#disable cloupe generation
		if [[ $verbose ]]; then
		@@ -1566,8 +1567,9 @@ if [[ $lock -eq 0 ]]; then
		fi
		# sed -i '/output_for_cloupe/s/^##//g' ${cellrangerpath}-cs/${cellrangerversion}/mro/mro
		# sed -i '/out cloupe cloupe/ {s/^##//g}' ${cellrangerpath}-cs/${cellrangerversion}/mro/mro #
		sed -i '/output_for_cloupe/s/CLOUPE_PREPROCESS\.output_for_cloupe/"null"/g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
		sed -i '/out cloupe cloupe/ {s/^/#/g}' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
		sed -i '/output_for_cloupe/s/CLOUPE_PREPROCESS\.output_for_cloupe/null/g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
		# sed -i '/output_for_cloupe/s/s/^/#/g' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
		# sed -i '/out cloupe cloupe/ {s/^/#/g}' ${cellrangerpath}-cs/${cellrangerversion}/mro/*mro
		fi
		echo " ${cellrangerpath} set for $technology"