Loading launch_universc.sh +29 −0 Original line number Diff line number Diff line Loading @@ -1395,6 +1395,35 @@ else done fi #remove adapter from QuartzSeq if [[ "$technology" == "quartz-seq2-384" ]]; then for convFile in "${convFiles[@]}"; do #remove adapter if detected sed -E ' /^TATAGAATTCGCGGCCGCTCGCGATAC(.{14})(.{8})/ { s/^TATAGAATTCGCGGCCGCTCGCGATAC(.{14})(.{8})/\1\2/g n n s/^.{27}(.{14})(.{8})/\1\2//g }' $convFile > ${crIN}/.temp mv ${crIN}/.temp $convFile done fi if [[ "$technology" == "quartz-seq2-1536" ]]; then for convFile in "${convFiles[@]}"; do #remove adapter if detected sed -E ' /^TATAGAATTCGCGGCCGCTCGCGATAC(.{15})(.{8})/ { s/^TATAGAATTCGCGGCCGCTCGCGATAC(.{15})(.{8})/\1\2/g n n s/^.{27}(.{15})(.{8})/\1\2//g }' $convFile > ${crIN}/.temp mv ${crIN}/.temp $convFile done fi #remove adapter from Sci-Seq and swap barcode and UMI if [[ "$technology" == "sciseq" ]]; then for convFile in "${convFiles[@]}"; do Loading Loading
launch_universc.sh +29 −0 Original line number Diff line number Diff line Loading @@ -1395,6 +1395,35 @@ else done fi #remove adapter from QuartzSeq if [[ "$technology" == "quartz-seq2-384" ]]; then for convFile in "${convFiles[@]}"; do #remove adapter if detected sed -E ' /^TATAGAATTCGCGGCCGCTCGCGATAC(.{14})(.{8})/ { s/^TATAGAATTCGCGGCCGCTCGCGATAC(.{14})(.{8})/\1\2/g n n s/^.{27}(.{14})(.{8})/\1\2//g }' $convFile > ${crIN}/.temp mv ${crIN}/.temp $convFile done fi if [[ "$technology" == "quartz-seq2-1536" ]]; then for convFile in "${convFiles[@]}"; do #remove adapter if detected sed -E ' /^TATAGAATTCGCGGCCGCTCGCGATAC(.{15})(.{8})/ { s/^TATAGAATTCGCGGCCGCTCGCGATAC(.{15})(.{8})/\1\2/g n n s/^.{27}(.{15})(.{8})/\1\2//g }' $convFile > ${crIN}/.temp mv ${crIN}/.temp $convFile done fi #remove adapter from Sci-Seq and swap barcode and UMI if [[ "$technology" == "sciseq" ]]; then for convFile in "${convFiles[@]}"; do Loading
