Loading launch_universc.sh +2 −2 Original line number Original line Diff line number Diff line Loading @@ -345,7 +345,7 @@ if [[ $verbose == "true" ]]; then fi fi #check if cellranger is writable #check if cellranger is writable if [[ ! -w $lockfile ]]; then if [[ ! -w $barcodedir ]]; then echo "Error: Trying to run cellranger installed at ${cellrangerpath}" echo "Error: Trying to run cellranger installed at ${cellrangerpath}" echo "launch_universc.sh can only run with cellranger installed locally" echo "launch_universc.sh can only run with cellranger installed locally" echo "Install cellranger in a directory with write permissions such as /home/`whoami`/local and export to the PATH" echo "Install cellranger in a directory with write permissions such as /home/`whoami`/local and export to the PATH" Loading @@ -353,7 +353,7 @@ if [[ ! -w $lockfile ]]; then echo " `whereis cellranger`" echo " `whereis cellranger`" exit 1 exit 1 fi fi exit 0 #check if technology matches expected inputs #check if technology matches expected inputs if [[ "$technology" != "10x" ]] && [[ "$technology" != "nadia" ]] && [[ "$technology" != "icell8" ]]; then if [[ "$technology" != "10x" ]] && [[ "$technology" != "nadia" ]] && [[ "$technology" != "icell8" ]]; then if [[ "$technology" != "custom"* ]]; then if [[ "$technology" != "custom"* ]]; then Loading Loading
launch_universc.sh +2 −2 Original line number Original line Diff line number Diff line Loading @@ -345,7 +345,7 @@ if [[ $verbose == "true" ]]; then fi fi #check if cellranger is writable #check if cellranger is writable if [[ ! -w $lockfile ]]; then if [[ ! -w $barcodedir ]]; then echo "Error: Trying to run cellranger installed at ${cellrangerpath}" echo "Error: Trying to run cellranger installed at ${cellrangerpath}" echo "launch_universc.sh can only run with cellranger installed locally" echo "launch_universc.sh can only run with cellranger installed locally" echo "Install cellranger in a directory with write permissions such as /home/`whoami`/local and export to the PATH" echo "Install cellranger in a directory with write permissions such as /home/`whoami`/local and export to the PATH" Loading @@ -353,7 +353,7 @@ if [[ ! -w $lockfile ]]; then echo " `whereis cellranger`" echo " `whereis cellranger`" exit 1 exit 1 fi fi exit 0 #check if technology matches expected inputs #check if technology matches expected inputs if [[ "$technology" != "10x" ]] && [[ "$technology" != "nadia" ]] && [[ "$technology" != "icell8" ]]; then if [[ "$technology" != "10x" ]] && [[ "$technology" != "nadia" ]] && [[ "$technology" != "icell8" ]]; then if [[ "$technology" != "custom"* ]]; then if [[ "$technology" != "custom"* ]]; then Loading
