Loading launch_universc.sh +5 −0 Original line number Diff line number Diff line Loading @@ -1022,6 +1022,7 @@ for key in ${keys[@]}; do fi if [[ -f $read ]] && [[ -h $read ]]; then if [[ $read == *"gz" ]]; then echo " found compressed file ..." gunzip -f -k $read #update file variable read=`echo $read | sed -e "s/\.gz//g"` Loading Loading @@ -1051,6 +1052,10 @@ for key in ${keys[@]}; do elif [[ -f ${read}.fastq.gz ]] || [[ -h ${read}.fastq.gz ]]; then gunzip -f -k ${read}.fastq.gz read=${read}.fastq elif [[ -f ${read}.gz ]] || [[ -h ${read}.gz ]]; then read=${read}.gz gunzip -f -k ${read} read=`echo $read | sed -e "s/\.gz//g"` else echo "Error: $read not found" exit 1 Loading Loading
launch_universc.sh +5 −0 Original line number Diff line number Diff line Loading @@ -1022,6 +1022,7 @@ for key in ${keys[@]}; do fi if [[ -f $read ]] && [[ -h $read ]]; then if [[ $read == *"gz" ]]; then echo " found compressed file ..." gunzip -f -k $read #update file variable read=`echo $read | sed -e "s/\.gz//g"` Loading Loading @@ -1051,6 +1052,10 @@ for key in ${keys[@]}; do elif [[ -f ${read}.fastq.gz ]] || [[ -h ${read}.fastq.gz ]]; then gunzip -f -k ${read}.fastq.gz read=${read}.fastq elif [[ -f ${read}.gz ]] || [[ -h ${read}.gz ]]; then read=${read}.gz gunzip -f -k ${read} read=`echo $read | sed -e "s/\.gz//g"` else echo "Error: $read not found" exit 1 Loading
