Loading test/run_tests_dropseq_gh_actions.sh +8 −8 Original line number Diff line number Diff line Loading @@ -10,14 +10,14 @@ export PATH=${HOME}/local/bin/cellranger-3.0.2:$PATH cellrangerversion=`cellranger count --version | head -n 2 | tail -n 1 | cut -f2 -d'(' | cut -f1 -d')'` cellrangerpath=`which cellranger` #rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 test/cellranger_reference/cellranger-tiny-ref/3.0.0 #cd test/cellranger_reference/cellranger-tiny-ref/ #cellranger mkref --genome=3.0.0 --fasta=genome-3.0.0.fa --genes=genes-3.0.0.gtf #cd ../../.. #make -C test/cellranger_reference/cellranger-tiny-ref reference #rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 #rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 test/cellranger_reference/cellranger-tiny-ref/3.0.0 cd test/cellranger_reference/cellranger-tiny-ref/ cellranger mkref --genome=3.0.0 --fasta=genome-3.0.0.fa --genes=genes-3.0.0.gtf cd ../../.. make -C test/cellranger_reference/cellranger-tiny-ref reference rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 rm -rf test/shared/icell8-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test #test manual setup bash launch_universc.sh -t "nadia" --setup Loading Loading
test/run_tests_dropseq_gh_actions.sh +8 −8 Original line number Diff line number Diff line Loading @@ -10,14 +10,14 @@ export PATH=${HOME}/local/bin/cellranger-3.0.2:$PATH cellrangerversion=`cellranger count --version | head -n 2 | tail -n 1 | cut -f2 -d'(' | cut -f1 -d')'` cellrangerpath=`which cellranger` #rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 test/cellranger_reference/cellranger-tiny-ref/3.0.0 #cd test/cellranger_reference/cellranger-tiny-ref/ #cellranger mkref --genome=3.0.0 --fasta=genome-3.0.0.fa --genes=genes-3.0.0.gtf #cd ../../.. #make -C test/cellranger_reference/cellranger-tiny-ref reference #rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 #rm -rf test/shared/dropseq-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 test/cellranger_reference/cellranger-tiny-ref/3.0.0 cd test/cellranger_reference/cellranger-tiny-ref/ cellranger mkref --genome=3.0.0 --fasta=genome-3.0.0.fa --genes=genes-3.0.0.gtf cd ../../.. make -C test/cellranger_reference/cellranger-tiny-ref reference rm -rf test/cellranger_reference/cellranger-tiny-ref/1.2.0 rm -rf test/shared/icell8-test/* test/shared/cellranger-tiny-fastq/* test/shared/mappa-test/ test/shared/smartseq3-test/ test/shared/indrop-v3-test/ test/shared/sciseq-v3-test #test manual setup bash launch_universc.sh -t "nadia" --setup Loading
