code to qsub convert.sh (465e29dd) · Commits · github_fork / Universc

run.convert.sh

0 → 100644

+15 −0

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			#!bin/bash

			export PATH=/home/kai.b/tools/cellranger-3.1.0:$PATH

			bash /home/kai.b/tools/launch_universc.sh \
			-R1 /home/kai.b/scRNAseq_ICELL8_3primeNoUMI/TEST/01_INPUT/I03Ljmini_S1_L002_R1_001.fastq \
			-R2 /home/kai.b/scRNAseq_ICELL8_3primeNoUMI/TEST/01_INPUT/I03Ljmini_S1_L002_R2_001.fastq \
			-s \
			-t icell8 \
			-i I03Ljmini \
			-r /home/kai.b/tools/cellranger_references/Ljaponicus_v2.5 \
			-c SC3Pv2 \
			-j sge \
			-w convert \
			--verbose