migrate STAR install to pre-compiled dynamic-linked (Windows compatible) (420246c0) · Commits · github_fork / Universc

Dockerfile

+11 −0

Original line number	Diff line number	Diff line
		@@ -65,6 +65,17 @@ RUN git clone https://github.com/linsalrob/fastq-pair.git \
		&& gcc -std=gnu99 ../main.c ../robstr.c ../fastq_pair.c ../is_gzipped.c -o fastq_pair \
		&& cp fastq_pair /bin/fastq_pair

		# Install STAR aligner
		RUN wget https://github.com/alexdobin/STAR/archive/2.5.1b.tar.gz \
		&& tar -xf 2.5.1b.tar.gz \
		&& rm 2.5.1b.tar.gz \
		&& cd STAR-2.5.1b \
		&& make \
		&& mv bin/Linux_x86_64/STAR* /usr/bin \
		&& cd source \
		&& make \
		&& cd /

		# RUN wget https://sourceforge.net/projects/bbmap/files/latest/download ; mv download BBMap_38.87.tar.gz \
		# && tar -xvzf BBMap_38.87.tar.gz