Commit 373ff8f1 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

set root user as default and cellranger as writeable 

   for nextflow and singularity compatibility
   closes #2

Conflicts:
	CHANGELOG
parent 942b9cfc

CHANGELOG

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@@ -6,6 +6,11 @@ 
scheduled for launch in Q1 2023, expected to be compatible with older models and

BGI or Ultima high throughput sequencing platforms)



- migrates sed calls to perl for better memory-efficiency on large input files



- set default user as "root" in docker containers and ensure that cellranger is writeable

  to allow running in nextflow or singularity



### 1.2.4



- enables unit testing via nextflow for nf-core module

Dockerfile

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@@ -84,3 +84,6 @@ RUN wget https://github.com/alexdobin/STAR/archive/2.5.1b.tar.gz \ 


RUN cp /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python/cellranger/chemistry.py /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python/cellranger/check.py



RUN chmod -R +rw /cellranger-3.0.2.9001/*



USER root

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