add whitelist for inDrop-v3 https://github.com/indrops/indrops/issues/32

AAACAAAC

AAACACGGT

AAACACTATC

AAACCGCCTCA

AAACGATC

AAACGTGAT

AAACTACATC

AAACTGTGTCA

AAAGAAAG

AAAGAGGCT

AAAGCCCGTC

AAAGTCATTCA

AAATAGCA

AAATTCCGT

AACAAATGTC

AACAGAACTCA

AACAGCGG

AACGATTTT

AACGCCAATC

AACGGTAGTCA

AACGTTAC

AACTCAGTT

AACTGCCTTC

AAGAACAGTCA

AAGAAGGT

AAGAGTATT

AAGCCTTCTC

AAGCTCCTTCA

AAGGATGA

AAGGCGCTT

AAGGGACCTC

AAGTATTGTCA

AAGTCCAA

AAGTCGGGT

AAGTGAGATC

AAGTTGTCTCA

AATAAGGA

AATACATCT

AATATGACTC

AATCCGGCTCA

AATCGAAG

AATCGTTCT

AATGGCGTTC

AATGTATGTCA

ACAAAGAT

ACAAGTAGT

ACAATCTTTC

ACACCAAGTCA

ACAGATAA

ACAGGCCAT

ACATCTCGTC

ACATGGACTCA

ACCAACCC

ACCAAGGGT

ACCACAGATC

ACCAGTTTTCA

ACCCATGC

ACCCGATTT

ACCCTCAATC

ACCGTCGATCA

ACCTGAAG

ACCTTCCCT

ACGAATTCTC

ACGACGACTCA

ACGCTTAA

ACGGAGCAT

ACGGCAGTTC

ACGGGTTATCA

ACGGTTGG

ACGTAAACT

ACTAATTGTC

ACTACCCGTCA

ACTAGAGC

ACTCATACT

ACTCGGAATC

ACTGCTGGTCA

ACTGGTCA

ACTTCGCTT

AGAAACCATC

AGAAAGTGTCA

AGAAGCTT

AGAATCAAT

AGACCTCATC

AGACGAGGTCA

AGAGAGAC

AGAGGTGCT

AGCAACGCTC

AGCACGTATCA

AGCATGCC

AGCCATCTT

AGCGTGGTTC

AGCTCCACTCA

AGCTTCGA

AGGACACAT

AGGAGTCGTC

AGGCAATATCA

AGGCCGAA

AGGCGTTTT

AGGGACTGTC

AGGGTAAATCA

AGGTAAGC

AGGTATATT

AGGTTCCCTC

AGTAATGGTCA

AGTAGTTA

AGTCACAAT

AGTCCGTGTC

AGTGCTTCTCA

AGTTGAAC

AGTTGCGGT

AGTTTGTATC

ATAACAGGTCA

ATAAGCTA

ATACACCCT

ATACTCTCTC

ATAGATGTTCA

ATATGCAA

ATATGGGTT

ATCAATCGTC

ATCAGGGATCA

ATCCCACC

ATCCGCATT

ATCCTAGTTC

ATCGCGCTTCA

ATCGTAAC

ATCTTGGCT

ATGACAACTC

ATGACTTGTCA

ATGCATAT

ATGCGGAGT

ATGGGCTCTC

ATGGTCTGTCA

ATGTGCCG

ATTACCTTT

ATTATTCGTC

ATTCTGAGTCA

ATTGAAGT

ATTGGCCCT

ATTTCCATTC

ATTTGTTGTCA

CAAACATT

CAACGCAGT

CAAGGAATTC

CAAGGGTTTCA

CAAGGTAC

CAATCTAGT

CAATTCTCTC

CACAACCTTCA

CACAAGTA

CACTAACCT

CACTTGATTC

CAGACTCGTCA

CAGATGGG

CAGGTTGCT

CAGTTTAATC

CATGACGATCA

CATGCTGC

CATTCATTT

CATTCGGGTC

CATTTCTATCA

CCACCTCT

CCACGTTGT

CCAGACAGTC

CCAGCGAATCA

CCATATGA

CCATCCACT

CCATCGTCTC

CCATGCATTCA

CCCGTAAG

CCCGTTCTT

CCCTCTTGTC

CCCTGTTTTCA

CCCTTGCA

CCGACTTTT

CCGAGATCTC

CCGATACGTCA

CCGGAAAT

CCGTAGCTT

CCGTCTTATC

CCTACGCTTCA

CCTATTTA

CCTCATGAT

CCTTTACATC

CCTTTGTCTCA

CGAAACTC

CGAACCGAT

CGAAGAAGTC

CGACATTTTCA

CGAGGCTA

CGATCCAAT

CGATGGCATC

CGGACTAATCA

CGGCTGTA

CGGTGAGTT

CGTACCGATC

CGTCGAATTCA

CGTGCAAC

CGTGGGATT

CGTGTACATC

CGTGTGTTTCA

CGTTGCCT

CGTTTCGTT

CTAACGCCTC

CTACGGGATCA

CTAGACTA

CTAGCACGT

CTAGTAGGTC

CTCAAACATCA

CTCACATC

CTCCCAAAT

CTCCTCCATC

CTCGGTGATCA

CTCTATAG

CTCTGCGTT

CTGAAGGGTC

CTGAGCGTTCA

CTGCGATG

CTGCTAGAT

CTGGAACATC

CTGGGTATTCA

CTGTCGCA

CTGTGACCT

CTGTTAAATC

CTGTTGTGTCA

CTGTTTCC

CTTAGGCCT

CTTAGTGTTC

CTTCTACGTCA

CTTTATCC

CTTTCACTT

CTTTGGACTC

GAAAGACATCA

GAAATACG

GAAGATATT

GAATCCCATC

GAATGCGCTCA

GACACAAA

GACACCTGT

GACTAGCGTC

GAGAAACCTCA

GAGCGGAA

GAGGAGTGT

GAGGGTCATC

GAGTGTACTCA

GATACGCA

GATGCAGAT

GATGGTTATC

GATGTGGCTCA

GATTAAAG

GATTACTTT

GATTGGGATC

GATTTCCCTCA

GCAAACTG

GCACTCAGT

GCATCACTTC

GCATCGAGTCA

GCCAAAGC

GCCAACATT

GCCTGGTATC

GCCTTGTGTCA

GCGCTGAT

GCGGTAACT

GCGTATTCTC

GCGTGCAATCA

GCTAAGTT

GCTACCGTT

GCTATGGGTC

GCTCGTAGTCA

GCTTCTCC

GGAACGAAT

GGAAGTCCTC

GGACTGGATCA

GGACTTCT

GGAGGTTTT

GGAGTAAGTC

GGATTGTTTCA

GGCAAGGT

GGCACTTCT

GGCCCAATTC

GGCGACAATCA

GGCTATAA

GGCTTTGCT

GGGAGATGTC

GGGATTACTCA

GGGCATCA

GGGTCATTT

GGGTCTAGTC

GGTAAATCTCA

GGTAGCCA

GGTCCTAAT

GGTCTTTCTC

GGTGTCGATCA

GGTTACAC

GGTTAGGGT

GGTTGAGATC

GTAAACAATCA

GTAAGCCG

GTAATCTGT

GTACGCTTTC

GTACGGACTCA

GTATACGT

GTATTGACT

GTCAAGAGTC

GTCAGACCTCA

GTCAGGTT

GTCCACTAT

GTCCGTCATC

GTCCTTGCTCA

GTCTAATC

GTCTGGAAT

GTCTTCCTTC

GTGAACTCTCA

GTGAGGCA

GTGATAAAT

GTGCCCATTC

GTGCGAAGTCA

GTGGTGCT

GTGTCACCT

GTGTCAGGTC

GTTACTAGTCA

GTTCTGCT

GTTGTCCGT

TAAACCGATC

TAACTTCTTCA

TAAGGGCC

TAATCCATT

TAATGTGGTC

TACCCTGCTCA

TACCGCTC

TACCTAAGT

TACCTCCCTC

TACGCGAGTCA

TACGTTCG

TACTGAATT

TAGATCAATC

TAGCCACATCA

TAGCGGAT

TAGGCTTTT

TAGGTACGTC

TAGTAGCCTCA

TAGTCTCT

TATCCACGT

TATCTGTCTC

TATGTGAATCA

TATTAGCG

TCAAATGGT

TCAAGGCGTC

TCAGCCTCTCA

TCATACCA

TCATAGCTT

TCATTTCATC

TCCAGAAGTCA

TCCCTGGA

TCCGACACT

TCCGCTGTTC

TCCTATATTCA

TCGACTGC

TCGAGTTTT

TCGCAATCTC

TCGGTCATTCA

TCGTGGGT

TCGTTCCCT

TCTAAACTTC

TCTATTCCTCA

TCTGATTT

TCTTTGACT

TGAATAGGTC

TGAATCCTTCA

TGACGTCG

TGAGAGCGT

TGAGCACATC

TGCACCAGTCA

TGCCGGTA

TGCGACTAT

TGCTGACGTC

TGCTTCATTCA

TGCTTGGG

TGGAAAGCT

TGGACGGATC

TGGCTAGTTCA

TGGGAATT

TGGTGTCTT

TGGTTAACTC

TGTTATCATCA

AAACAAAC

AAACACGG

AAACACTA

AAACCGCC

AAACGATC

AAACGTGA

AAACTACA

AAACTGTG

AAAGAAAG

AAAGAGGC

AAAGCCCG

AAAGTCAT

AAATAGCA

AAATTCCG

AACAAATG

AACAGAAC

AACAGCGG

AACGATTT

AACGCCAA

AACGGTAG

AACGTTAC

AACTCAGT

AACTGCCT

AAGAACAG

AAGAAGGT

AAGAGTAT

AAGCCTTC

AAGCTCCT

AAGGATGA

AAGGCGCT

AAGGGACC

AAGTATTG

AAGTCCAA

AAGTCGGG

AAGTGAGA

AAGTTGTC

AATAAGGA

AATACATC

AATATGAC

AATCCGGC

AATCGAAG

AATCGTTC

AATGGCGT

AATGTATG

ACAAAGAT

ACAAGTAG

ACAATCTT

ACACCAAG

ACAGATAA

ACAGGCCA

ACATCTCG

ACATGGAC

ACCAACCC

ACCAAGGG

ACCACAGA

ACCAGTTT

ACCCATGC

ACCCGATT

ACCCTCAA

ACCGTCGA

ACCTGAAG

ACCTTCCC

ACGAATTC

ACGACGAC

ACGCTTAA

ACGGAGCA

ACGGCAGT

ACGGGTTA

ACGGTTGG

ACGTAAAC

ACTAATTG

ACTACCCG

ACTAGAGC

ACTCATAC

ACTCGGAA

ACTGCTGG

ACTGGTCA

ACTTCGCT

AGAAACCA

AGAAAGTG

AGAAGCTT

AGAATCAA

AGACCTCA

AGACGAGG

AGAGAGAC

AGAGGTGC

AGCAACGC

AGCACGTA

AGCATGCC

AGCCATCT

AGCGTGGT

AGCTCCAC

AGCTTCGA

AGGACACA

AGGAGTCG

AGGCAATA

AGGCCGAA

AGGCGTTT

AGGGACTG

AGGGTAAA

AGGTAAGC

AGGTATAT

AGGTTCCC

AGTAATGG

AGTAGTTA

AGTCACAA

AGTCCGTG

AGTGCTTC

AGTTGAAC

AGTTGCGG

AGTTTGTA

ATAACAGG

ATAAGCTA

ATACACCC

ATACTCTC

ATAGATGT

ATATGCAA

ATATGGGT

ATCAATCG

ATCAGGGA

ATCCCACC

ATCCGCAT

ATCCTAGT

ATCGCGCT

ATCGTAAC

ATCTTGGC

ATGACAAC

ATGACTTG

ATGCATAT

ATGCGGAG

ATGGGCTC

ATGGTCTG

ATGTGCCG

ATTACCTT

ATTATTCG

ATTCTGAG

ATTGAAGT

ATTGGCCC

ATTTCCAT

ATTTGTTG

CAAACATT

CAACGCAG

CAAGGAAT

CAAGGGTT

CAAGGTAC

CAATCTAG

CAATTCTC

CACAACCT

CACAAGTA

CACTAACC

CACTTGAT

CAGACTCG

CAGATGGG

CAGGTTGC

CAGTTTAA

CATGACGA

CATGCTGC

CATTCATT

CATTCGGG

CATTTCTA

CCACCTCT

CCACGTTG

CCAGACAG

CCAGCGAA

CCATATGA

CCATCCAC

CCATCGTC

CCATGCAT

CCCGTAAG

CCCGTTCT

CCCTCTTG

CCCTGTTT

CCCTTGCA

CCGACTTT

CCGAGATC

CCGATACG

CCGGAAAT

CCGTAGCT

CCGTCTTA

CCTACGCT

CCTATTTA

CCTCATGA

CCTTTACA

CCTTTGTC

CGAAACTC

CGAACCGA

CGAAGAAG

CGACATTT

CGAGGCTA

CGATCCAA

CGATGGCA

CGGACTAA

CGGCTGTA

CGGTGAGT

CGTACCGA

CGTCGAAT

CGTGCAAC

CGTGGGAT

CGTGTACA

CGTGTGTT

CGTTGCCT

CGTTTCGT

CTAACGCC

CTACGGGA

CTAGACTA

CTAGCACG

CTAGTAGG

CTCAAACA

CTCACATC

CTCCCAAA

CTCCTCCA

CTCGGTGA

CTCTATAG

CTCTGCGT

CTGAAGGG

CTGAGCGT

CTGCGATG

CTGCTAGA

CTGGAACA

CTGGGTAT

CTGTCGCA

CTGTGACC

CTGTTAAA

CTGTTGTG

CTGTTTCC

CTTAGGCC

CTTAGTGT

CTTCTACG

CTTTATCC

CTTTCACT

CTTTGGAC

GAAAGACA

GAAATACG

GAAGATAT

GAATCCCA

GAATGCGC

GACACAAA

GACACCTG

GACTAGCG

GAGAAACC

GAGCGGAA

GAGGAGTG

GAGGGTCA

GAGTGTAC

GATACGCA

GATGCAGA

GATGGTTA

GATGTGGC

GATTAAAG

GATTACTT

GATTGGGA

GATTTCCC

GCAAACTG

GCACTCAG

GCATCACT

GCATCGAG

GCCAAAGC

GCCAACAT

GCCTGGTA

GCCTTGTG

GCGCTGAT

GCGGTAAC

GCGTATTC

GCGTGCAA

GCTAAGTT

GCTACCGT

GCTATGGG

GCTCGTAG

GCTTCTCC

GGAACGAA

GGAAGTCC

GGACTGGA

GGACTTCT

GGAGGTTT

GGAGTAAG

GGATTGTT

GGCAAGGT

GGCACTTC

GGCCCAAT

GGCGACAA

GGCTATAA

GGCTTTGC

GGGAGATG

GGGATTAC

GGGCATCA

GGGTCATT

GGGTCTAG

GGTAAATC

GGTAGCCA

GGTCCTAA

GGTCTTTC

GGTGTCGA

GGTTACAC

GGTTAGGG

GGTTGAGA

GTAAACAA

GTAAGCCG

GTAATCTG

GTACGCTT

GTACGGAC

GTATACGT

GTATTGAC

GTCAAGAG

GTCAGACC

GTCAGGTT

GTCCACTA

GTCCGTCA

GTCCTTGC

GTCTAATC

GTCTGGAA

GTCTTCCT

GTGAACTC

GTGAGGCA

GTGATAAA

GTGCCCAT

GTGCGAAG

GTGGTGCT

GTGTCACC

GTGTCAGG

GTTACTAG

GTTCTGCT

GTTGTCCG

TAAACCGA

TAACTTCT

TAAGGGCC

TAATCCAT

TAATGTGG

TACCCTGC

TACCGCTC

TACCTAAG

TACCTCCC

TACGCGAG

TACGTTCG

TACTGAAT

TAGATCAA

TAGCCACA

TAGCGGAT

TAGGCTTT

TAGGTACG

TAGTAGCC

TAGTCTCT

TATCCACG

TATCTGTC

TATGTGAA

TATTAGCG

TCAAATGG

TCAAGGCG

TCAGCCTC

TCATACCA

TCATAGCT

TCATTTCA

TCCAGAAG

TCCCTGGA

TCCGACAC

TCCGCTGT

TCCTATAT

TCGACTGC

TCGAGTTT

TCGCAATC

TCGGTCAT

TCGTGGGT

TCGTTCCC

TCTAAACT

TCTATTCC

TCTGATTT

TCTTTGAC

TGAATAGG

TGAATCCT

TGACGTCG

TGAGAGCG

TGAGCACA

TGCACCAG

TGCCGGTA

TGCGACTA

TGCTGACG

TGCTTCAT

TGCTTGGG

TGGAAAGC

TGGACGGA

TGGCTAGT

TGGGAATT

TGGTGTCT

TGGTTAAC

TGTTATCA

    elif [[ "$technology" == "icell8" ]]; then

        barcodefile=${SDIR}/iCell8_barcode.txt

    elif [[ "$technology" == "indrop-v1" ]] || [[ "$technology" == "indrop-v2" ]]; then

        # use bustools whitelist for inDrops-v2 with adapters removed https://github.com/BUStools/bustools/issues/4 

        barcodefile=${SDIR}/inDrops_barcodes.txt

    elif [[ "$technology" == "indrop-v3" ]];

        # inDrops-v3 whitelist is a combination of v2 whitelists https://github.com/indrops/indrops/issues/32

        ## version 2 whitelist will be used until dual indexing (i7) is supported for read I2: https://github.com/alexdobin/STAR/issues/825

        barcodefile=${SDIR}/inDrops-v2_barcodes.txt 

    elif [[ "$technology" == "quartz-seq2-384" ]]; then

        barcodefile=${SDIR}/Quartz-Seq2-384_barcode.txt

    elif [[ "$technology" == "quartz-seq2-1536" ]]; then