add verbose output for debugging

## test 10x data

# unzip input data

if [[ ! -f /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python/cellranger/barcodes/3M-february-2018.txt.gz ]]; then

    gzip /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python/cellranger/barcodes/3M-february-2018.txt

fi

# test cellranger call

cellranger testrun --id="tiny-test"

# unzip input data

gunzip /universc/test/shared/cellranger-tiny-fastq/3.0.0/*fastq

gunzip /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python/cellranger/barcodes/3M-february-2018.txt.gz 

gunzip -fk /universc/test/shared/cellranger-tiny-fastq/3.0.0/*fastq.gz

gunzip -fk /cellranger-3.0.2.9001/cellranger-cs/3.0.2.9001/lib/python/cellranger/barcodes/3M-february-2018.txt.gz 

# test cellranger call

cellranger count --id="tiny-count" \

 --fastqs="/cellranger-3.0.2.9001/cellranger-tiny-fastq/3.0.0/" --sample="tinygex_S1" \

 --transcriptome="/cellranger-3.0.2.9001/cellranger-tiny-ref/3.0.0/" \

 --chemistry="SC3Pv2"

cellranger count --id="tiny-count-v3" \

 --fastqs="/cellranger-3.0.2.9001/cellranger-tiny-fastq/3.0.0/" --sample="tinygex" \

 --transcriptome="/cellranger-3.0.2.9001/cellranger-tiny-ref/3.0.0"

cellranger count --id="tiny-count-v2" \

 --fastqs="/cellranger-3.0.2.9001/cellranger-tiny-fastq/1.2.0/" --sample="tinygex" \

 --transcriptome="/cellranger-3.0.2.9001/cellranger-tiny-ref/1.2.0"

# call convert on 10x with multiple lanes

bash /universc/launch_universc.sh --id "test-10x" --technology "10x" \