Commit 2e0174c8 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

add support for Quartz-Seq-2 barcode whitelists

parent eeb885f8
Loading
Loading
Loading
Loading
+1536 −0

File added.

Preview size limit exceeded, changes collapsed.

+1536 −0
Original line number Diff line number Diff line
CATATTCCTGGTGG
ACAACAAGGTTCGG
TCGGTGAGGATTGG
GACAACATCAGCGG
ATATTGCAACCTGG
TTGGAACCTTGCCG
GTTATAGCTTGTCG
GAGGTATGGTCTTG
AGCTCATAAGTGAG
GAGAAGTAATCCAG
GGAATTCGCTTCGG
TGATTCCTAGGCGG
CCTTCTCCATCCTG
CGCGAATTGATTAG
TTAGGCGTTGGTGG
ACAAGTCTCACGTG
AGACGGAGTTGTGG
ACATGAGTGTTCTG
AATCCTTCGTGTGG
CTCTCCAAGACTGG
CCAAGCGAACCTTG
TACTACGGTTACGG
CACGTGCATACTGG
TATAGGCAACGCGG
ATATGAAGGCTTGG
CCTTAGATCCTCCG
TACATAAGCCTTCG
GCCAGGAAGTCTTG
AGCAAGACTAGCGG
AGCCTTGGATCTGG
TGAGATCCACCTCG
GTCCAGTAGTATGG
TTATACTCCTTGCG
TCCTTGGTACGTGG
AGGCAATCAGGTGG
TCTAAGCGGTCTTG
GAGGCTTAACTTGG
TGACAGGACTTCGG
GGAGCACTAGCTTG
ATGTTATCTCGTGG
AGCTAATGTTGTCG
GGAACGATATTCAG
TATGGTGGACCTGG
GCATGTATTACCGG
ACACGCTACTTCGG
TTGTCAAGTGGCGG
AGGTATGTATACGG
GCAAGTACACATAG
TTGCGAGTCTCCTG
CAATCCACACTCCG
ACACTTCGCCTTGG
GTATATAACTCCGG
CGTCATTCTTGCGG
ACAGAATCGTCCGG
TTACTGGCTAGCGG
GTAATGCCGTGTAG
CGCGATAACGATCG
TCTCTGGTAGCTAG
ATTGGTTATGACGG
CAACCATTGCTTGG
GCTAATTCCACTCG
ACTAGTCCTTGGCG
GACAATCTTCTTGG
AGGTCACTGCCTTG
TTCTGCGCCATTCG
CCTCGAGAATGTGG
GAGTTCTTGTGCGG
ACCATGTCGTTCCG
TATAATTGCCGCGG
TAGAAGATTGTCGG
GATGTGGACTTCCG
AACCTGGAACGCTG
CTGAACGTGGCTTG
GAGGATATACTGAG
GTTCAACTATACGG
CAGCATTGTACGTG
CCAACTTCGGTCTG
TCTTGCATCTTCGG
TTGCTAAGATACGG
AGAACACCATCCGG
CAGTCAGAACATGG
ATTGGCTGCTGTGG
AACACCAATTACGG
AACAGTACCTGCGG
GATAGTTGATACGG
ATAAGGCATAGTGG
TTGTTGACACTTGG
CATTACCGCTTCGG
GTATCACGCGGTTG
AGCATCCAACATGG
CGTCTTCGACTTCC
TCAACTCGACAGCC
AAGGCGACAGTCTC
GACTGAAGATCTCC
CTAGCTAATGCTCC
CAGGTACTTATGTC
TGCTGTCAGATTGC
CTATTGCCTTCGCC
CAGAGGCTGTTGTC
ATGAGTAGACCTTC
ACCGTTAAGTCGCC
ATCTGTGGTTCTAC
ACCAAGGAACATAC
TTCGTTAACTGTCC
ATGCTCTAACCTCC
TGACTCAAGCGTGC
TTAACCGGAGTTCC
GACACGTGTTCTCC
TGTGCGGTTCGTTC
AAGCGCCATGGTTC
TCAGAGGTAGTTAC
GTTGGTTAGTCTTC
CATTACTATACCGC
CGACAACTACTGCC
ATACCTCAAGGTCC
CAAGGTCTTCCTCC
CCAATTGAGCGCTC
ACACTACCGTGTCC
AATAGTTGCGTTGC
CAATTCAGTAGCAC
AACCACGATAGGCC
GCTAGAGACTCTTC
GTTAGGAAGTTCAC
TTGATCCGTTCTTC
GGTTAGTAGATTCC
CCGGACTAACCTTC
TAGTTGGTACCTTC
AGAGCGATCGTTGC
AAGAGTTCTACCAC
ATAATAAGCACGCC
GACCTAACTAGCGC
CTTCTAGAGGTTCC
AGCATGGACTCTCC
TTCCAGATACCTTC
ATAAGACACTCTGC
GAATTCTCGATTCC
GTCAATTCACCTAC
GGTATTAAGACGTC
TCTCACTTCACTCC
TGTTCACCTGCGTC
TGTAACTAGTTGCC
GGTCTACTGTTCGC
TTCCTCTAATCGAC
GAGTCCGATCTCTC
GGTGGATAAGTTCC
CCTCCTGAATAGAC
TAATTGCAATCCGC
AATACTGACGCTCC
AAGTATTCCACTCC
AGGCAGCTAAGTCC
GTATACTCTCAGTC
TATCGGTTGCCTCC
TGGCCTGTACTGTC
TACACCTTATTGCC
ATACATGACTTGCC
TCCGCTTGGTTGTC
TCCATGCAATTGTC
TCCATACGGAGTCC
TGACTCTTCTCGCC
ACTTCAATTCTGCC
TTCACTATTGAGCC
AGAGGAACCGCTTC
AGAAGTCAAGGCGC
ATCGGATAAGATGC
GCGCAATAGTCTCC
AATACGCCATATCC
ACCTCGTAGCTCTC
AACCAGACTTCTCC
TAGGTTCGAGCTCC
CGATCGGATCATCC
CGTCAAGCATCTCC
GGATTATTGGCGCC
GCGAGGTCGTATTC
CTGGCGGAACATAC
CATGGCCAATAGCC
TCTCGAGGATATTC
CTGTGGACCATGTC
TAACTTAAGACCGC
GTTGCCTTATGGCC
GTGATCAATGCCTC
CAAGGATCTGCGAA
GCTTCACACTCCAA
AGGAAGAACCTTGA
CTCGCTAACAAGAA
TCTGGACTCTGTTA
TATTGAGAGCGGAA
AACTCTCCGGAGAA
GAACAGTGGACCAA
AGGTGTAATGTGGA
GCGCTTGTCGACAA
GCTCCGTCACACAA
GTCATTGGTCCGAA
AATATCTTCGGCCA
AGTGGCGTTAACAA
GTGTCCGGCATTGA
CAACCGGAGAAGAA
CTCAGGACTTAGTA
GCTTAGACTAGCTA
GCAGATTAGTGTCA
GGTTGGTGGCTTAA
CTAAGAACACCGAA
TTAGACGTCTACGA
GGACCTCGTGAGAA
GGAAGTTGAGGTAA
ACATTGTCCACCAA
ATCGCGCCAACCAA
GCGAAGTCCGAGAA
ATTAGGAGCTCGAA
GCGTGACGCAGTAA
GGATCCTTAGACAA
CATCAATGCGGCAA
AAGGCCACTAACAA
GGTACCGAAGAGAA
CGATCAGGTCGGAA
ACAACATGCTCCTA
GAGACAAGCGATAA
GAAGCATAGGAGAA
CACCTCCATGTGTA
CGCATGCTATAGAA
TGGTCGATCTTGAA
TAGATCTCGCAGAA
TAGTGAGCTAGTCA
CCTGTGAGCCGTTA
CGACGACTCAGGAA
ATCTTGACGGCGAA
CTCTTGGTGTTCAA
TCGGTACTAAGGAA
ACCTGGTGATACAA
ATGAGCGCATATCA
CTATACAGTGCGTA
GAGAGAAGGTTGTA
CTGGAGAGGTACAA
TTATACGATCGCCA
CTCGAATCCTACAA
AAGAGGTCGGCTAA
AACAAGCTCCGCAA
CAGGTCCTGAAGAA
ATTCTTGCTCCTGA
ATGAAGGTCTGTGA
TTGTCGGCCGAGAA
GGCTTAGCGGAGAA
TGGACGTCGATTAA
GTGGTAGCCTAGAA
TCTTCGTATCGCAA
AAGTGGTGTTCCTA
GGAAGGTCATACAA
GATTCGGTCCGCTA
ACACGTATGTGTGA
GCAGTTGCTAGTAA
GTGTTGTCGCGGAA
CGCTGGTAATGTAA
CAGCTGTGAATCAA
TCGCGTTGCCAGAA
TGCACTCTACCTTA
CTGAGCTTGTTCAA
TATCGGACGTACAA
CAGCCAATAAGGAA
GGTTCTATAGCCTA
CTTACTGGTGCCAA
ACATCTTGAGCTGA
GATCTAACCGAGAA
GAAGCCTAATCCAA
AGTAACGGTTGGTA
CCTCTTCCTATCAA
GAGAGGCGACACAA
CGAATCGCAAGGAA
TGACTCGTTGGTTA
TCCTAGGAGAAGAA
TCGTGATGTGTGTA
TCTGTGCACCAGAA
GTCTTACGCCGCTA
CTTGTACTTCCAGA
ATAGTGGTCGTAGA
GCACAACTTGTAGA
AAGAGCCTTGTAGA
GACCTGTCATTAGA
CTGTCGTAATGACA
TATCTCGGTACACA
TGATTGCTTGCACA
ATTACCTCTCCACA
GGTATCCAATCACA
AGACGAGACTCACA
ACCTTCTTCTCACA
GCATCAAGAGTACA
TAGTCCTTCCTACA
CTTGGCCTATTACA
CGCGACAAGTTACA
GTGCTTGAGTTACA
AACAGACCGTTACA
GTGCCTCACCGATA
TTGCGCCTCACATA
ACCGCGAAGATATA
CAGGACCGTATATA
TTATCTAGACGAGG
TAACCGTAATGAGG
ACTAAGCTGACAGG
GTTATGCTACCAGG
CCATGAGTAATAGG
ACGGTTCAGATAGG
TGACGGAGGATAGG
ACTATCGCGCTAGG
ATTGGAGCATTAGG
ATGCAGAGCTGACG
ATTGTATCACCACG
GTAAGTCCTATACG
TTCATGACCAGATG
ACCGACTGATTATG
AATAACCTAGCAGC
TAAGACAAGACACC
GTATTCTTACCACC
AGACTTCAGATACC
CGAACGCTCACATC
GACAGGAGAGAGAT
CCAGTCCAACAGAT
CAGAATGGACAGAT
GTTCGCAGGCAGAT
CATGCGAGTCGGAT
GGAACGAGGACGAT
GTCAGTTCGATGAT
GGTCGGTCCATCAT
TCGCTGAACCATAT
CGCCGGCACTATAT
GGCACCGCGATTAT
CTGCATCAGGTTAT
CGGAAGCCACTTAT
AGTCCACTAGGCGT
TTGGTCTGGTGCGT
CTCACCGTGATCGT
TAACAAGTGCTCGT
GGATTCCAGTTCGT
AGTTGATGAGGTGT
GCTTGAAGGCGTGT
GCCATAGAACCTGT
CGAATCTTACCTGT
CTGCCAGAAGTTGT
GGTCCAACCGTTGT
CATTCCTCTGTTGT
GCTCCTCGACTTGT
CACCAACACCTTGT
ACACCGGTTCTTGT
ACAGCAGGCAGACT
ATGGCGTGATCGCT
GTCGTCGTAGTGCT
GTGTCGTCACACCT
CTTGACGAACGCCT
TCTTGAAGCCTCCT
CACATAACCAGTCT
GAATTGCGGCGTCT
GACGTTCAGCCTCT
TTACCGTGGCCTCT
GGCATACACGTTCT
CGTATCGTTGTTCT
CCATGGCCACTTCT
CTTCGGTCTCTTCT
AGTTGTGCCACATT
CCGGCGCCAATATT
GGCGAGAGGTTATT
CCACCGAAGGAGTT
GCCTTCCAATAGTT
TTGCCGTACCGGTT
GGTAGCCTGTGGTT
GCTCGTCATGCGTT
GTATTGTAGCCGTT
TGGTTCATGTCGTT
AGGAGGTGCATGTT
AAGGAGCAGGTGTT
GAGAACCGTGTGTT
CCGGATGCACTGTT
GGACGGAGACACTT
CCTCACCTACGCTT
ATTGTGGCGCGCTT
AAGTCTGTCTGCTT
GGAGTTAACACCTT
GCGAGATGTGCCTT
TCGAGCACATCCTT
GCATCCTTATCCTT
CATCCGGAGATCTT
GTTACACCGATCTT
AGTTGACGCATCTT
CTTGTCACAGTCTT
GCTGTCGAGGTCTT
CTCCACTGACTCTT
GAACATTGGCTCTT
GGCGAGTACCTCTT































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































+4 −0
Original line number Diff line number Diff line
@@ -697,6 +697,10 @@ else
        fi
    elif [[ "$technology" == "icell8" ]]; then
        barcodefile=${SDIR}/iCell8_barcode.txt
    elif [[ "$technology" == "quartz-seq2-384" ]]; then
        barcodefile=${SDIR}/Quartz-Seq2-384_barcode.txt
    elif [[ "$technology" == "quartz-seq2-1536" ]]; then
        barcodefile=${SDIR}/Quartz-Seq2-1536_barcode.txt
    elif [[ "$technology" == "custom"* ]]; then
        custom=`echo $technology | grep -o "_" | wc -l`
        custom=$(($custom+1))