Commit 2cf666c1 authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

handle files in other directory

parent 99a9142b
Loading
Loading
Loading
Loading
+18 −0
Original line number Diff line number Diff line
@@ -583,6 +583,15 @@ case $read in
        read1[$i]=$read
        echo "   renaming $read";;
esac
path=$read
read=`echo $read | sed -r "s/.+\/(.+)/\1/"`
if [ ! -f $read ]
    then
    echo "  warning: file $read not in current directory"
    echo "   creating link to full path"
    ln -s $path $read
    read1[$i]=$read
fi
done

echo " checking file name for $read2 ..."
@@ -624,6 +633,15 @@ case $read in
        read1[$i]=$read
        echo "   renaming $read";;
esac
path=$read
read=`echo $read | sed -r "s/.+\/(.+)/\1/"`
if [ ! -f $read ] 
    then
    echo "  warning: file $read not in current directory"
    echo "   creating link to full path"
    ln -s $path $read
    read2[$i]=$read
fi
done

echo " files: ${read1[@]}  \(Read1\)"