Merge branch 'dev' of github.com:minoda-lab/universc into dev (2b902e3f) · Commits · github_fork / Universc

launch_universc.sh

+2 −2

Original line number	Diff line number	Diff line
		@@ -944,7 +944,7 @@ if [[ $umilength -gt 10 ]]; then
		temp_chemistry="SC3Pv3"
		fi
		if [[ "$technology" == "c1-cage" ]] \|\| [[ "$technology" == "smartseq2" ]] \|\| [[ "$technology" == "smartseq3" ]] \|\| [[ "$technology" == "strt-seq"* ]]; then
		temp_chemistry="SC5P-PE"
		temp_chemistry="SC5P-R1"
		fi
		if [[ "$technology" == "10x" ]]; then
		temp_chemistry="auto"
		@@ -2049,7 +2049,7 @@ if [[ "$technology" == "smartseq" ]] \|\| [[ "$technology" == "smartseq3" ]] \|\| [[
		echo " Using $chemistry for $technology"
		fi
		if [[ "$chemistry" == "fiveprime" ]]; then
		chemistry="SC5P-PE"
		chemistry="SC5P-R1"
		fi
		if [[ "$chemistry" != "SC5P-PE" ]] && [[ "$chemistry" != "SC5P-R1" ]] && [[ "$chemistry" != "SC5P-R2" ]]; then
		echo "Error: option --chemistry must be SC5P-PE, SC5P-R1 or SC5P-R2"