configure cellranger dependency for GH Actions tests

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Build config

        run: pwd; ls ../*; ls ../../*

      - name: Paths

        run: which cellranger; echo $PATH

      - name: Call functions

        run: bash test/test_call.sh

      - name: Test docker container

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Build config

        run: pwd; ls ../*; ls ../../*

      - name: Test runnning on ICELL8

        run:  test/run_tests_icell8.sh

  universc:

    container_name: universc

    build: .

    ports:

      - "5000:5000"

    command: echo "build complete"

  cellranger:

    container_name: cellranger_clean

    image: "tomkellygenetics/cellranger_clean:3.0.2"

#!/bin/bash

# run tests in universc directory (parent of test directory)

cd $(dirname ${BASH_SOURCE[0]})/..

pwd

## check cellranger installed

cellranger count ---version

## check convert is installed

bash /universc/launch_universc.sh -v

bash launch_universc.sh -v