Loading launch_universc.sh +3 −0 Original line number Diff line number Diff line Loading @@ -1160,6 +1160,9 @@ else elif [[ "$technology" == "icell8" ]]; then barcodefile=${whitelistdir}/ICELL8_barcode.txt echo "***WARNING: selected barcode file (${barcodefile}) contains barcodes for all wells in ICELL8. valid barcode will be an overestimate***" elif [[ "$technology" == "marsseq-v2" ]]; then barcodefile=${whitelistdir}/MARS-Seq2_barcode.txt echo "***WARNING: selected barcode file (${barcodefile}) contains barcodes for all wells in ICELL8. valid barcode will be an overestimate***" elif [[ "$technology" == "quartz-seq2-384" ]]; then barcodefile=${whitelistdir}/Quartz-Seq2-384_barcode.txt elif [[ "$technology" == "quartz-seq2-1536" ]]; then Loading whitelists/MARS-Seq2_barcode.txt 0 → 100644 +384 −0 Original line number Diff line number Diff line CTATTCG ACTCAGG ACACGTG TCTTCGA AGCACTG AGTGCGT AACGTTC ATCTGTC GTATGCG ATCTGCA GCAGTAG CAGTACG TGCACAA CGTAACT AGCTCAA ATAACCG TGTCACG TTCCTGA GGATCTA TACCAGT GGAGACT AGCTAGT ACTTGGC TAGCGCA CCTAAGG GGCGATT GCTGAAT GAATAGC ACTGCAG CTTACGG CGCATAT GCCTACA TTCAAGC CTGTGAG CTAGTGC CTTGCAG ATGCCAA CATGCTG CTAAGCG AGCCGAT CGCTTGA GATCACA GTGCTAT AGGCTAG CTACGTA ATAGCGA GTAGTCT CTACAAG CATGAAC TACTAGC GCAACTA AGGCGTT CGCTACA AAGGTAC AAGCCTT CTACAGC CTTAGTG GGCTAGA TTGCCAG CGTTGAA TCGAAGG TATAGGC AACAGCT TCACAAG TGGAGCA CAATCGA TTGCAGA ACCGATC CTGATGG GCTTAGA TACGAGG AACGGTG AGTCTCC GACACTG ATCAGGC CGGATTA TCTCGAA ACGCTAT TCGATAC TGACGGA GCTTCAT GGCACTT CGAGTCT CAGTCAA TGCCTAA CCTGACT TCTGGAG AACTCGT CCTGATG CACAGAT CTTCGAA CGTCAGA TCGACTC CCATGGT TACGTAC TACCGGA AGAGCAT GTCATGC ACGCTTC TCTTAGG TGATGAC GTAAGTC ATCTACG GTACGGT GGTCTTA CGGTCTA TGAGCAG GCATGAT GAGCTAG CATTGTC GTTAGGC CTTAAGC GGTTCAA CAAGGTT ACTGTCC TCTAACG AGTCGAC AACATCG CCATTGC TGCTACT CTGGAAG ATAGCCT GTAACGT CACGAGT AGTACCT CTGTATG CTCATGA AGATCAC GATAGTC GACCTGT CATGAGG CAACGGT CGATATC GAGATCG GCTGACA TTGGTCA GCATCAG TGCTGAG ACGTTGG GACTGTG GACGCTA TCGTGAG ACGGATA CAGCGTA TACGACT CGTGCAT AATGCCG AGCTGTT GCATCGT CATGGAT ATTCCGT CATACAG TATGTCC TACCGAT GCATCCA CGTACTC AGCAGGT CATTGGA GCATGGA CGAAGGT GTAATCC GTCACAC TTCAGTC ACAATCG CATGTGC ATGACGT GGAACCT ACAGGTA TCAGCCT CACAGTA GTCGAGA AGATGCG GCATACT TAGACCA TAGGCAT GTTGACT GGACTTC GCTCATA GTTCAAC ACGATGC TGAGACC GGTCCAT GGTGATC CAATGCG CAGGAAT GCCATTC TGGACAC GTTACCT CTTGTAC ATAGGTC ATGGCTC CAACATG TGATCCG TACTCGA TTAGCGT AACCTTG CACGTCA CCGCATT TGTGACT CGTACGT TGACGTC GCTACCA GGACGAT GACATCC CTAGCTC GATGTAC TCGCCAA ACTCGGT ATGCTAC GGTATCA GCTACTC AGGACAT CTATCGT TGCACTC GATGCTC GACGTAG AGGTTCG GAACCTC AGTGTAC CTCGATC GCTTGTA ATCGTGA CGTATGA GTGTCTA GCTACGT TCACTGA CGCAATC TTGCACC TCTACAG GACCTAA CAGCACT ATGAGCG CGGATGT CTTCAGT TCTCATG TTGCCTA TATCCGC TAACAGC CCGAAGT CGAGTGA CGATGAT AATCACG TACTGAC ACAGCTC TGCACGT GCCATAG CGCATTG GAGACTA AGCTGGA GCTTAAG GCCGTAA ATCCAGG ACACTGG GTTGCAC TCAGTGG GGTATGC GTTGCTA AAGTGCA GCGACAT GTCGTCA ACATCCG GGTCTAG TAATGCC CAACTGA CGAGATT CGTTACG CGACGTT ACATGCT GCAATTG ACGTGGT CAGTTCA TTCATGG CGTCCAA TGAATCC GGCATAC AAGGCTA TATCGCG CGAACTT CTAGACG TCCGCAT GAGCTTC GATCGCT TGTCTCA CCATGAC CATCTGG TACGGTC CGAGTAG GACACCT GAGTTCT TTCAGGA GACGTCT TCACTTG AGATACC CTTGACC GGAATCG CGTGAGT AGTTCGC TACCATG GTTCGGA TGGTACC CTGTCAT GAGTCTT GCTAGAA CGACACT AGGTCTG CGAATTC TAGCGTG ATGTGCC AGTGAGC TAGGTGC AGTTGCA GTGGTAC ATTCCAG ACGTCAA CTGATCA CTGTGGA TAAGGCT CTATGCC GTTAGCG GAGGATC CCGTGTA CTGTCCA TCACAGT TCAACGT CAGTTGT GTCAGTG CTAGAGT TGACACA ATCGCCA ACTCTTG ATTGACG AGCCTTC GAATCTG GTCACTA TAGTGGC AGGAGTC ATGCGCA CTACGAT ATGTCGC GTAACTG AGTCAGT TAGACGC ACCAGTG CATCCGT GTTCATG CAGCGAT ACTACTG TGGATGC GAAGTCC GATTCAG AGGCATG AGATCGA TCTAGTC GCGTTAG TAGAGCC TGCGTAT GGACTAA TGACATG TTAGGCA GAGCTGA ACGGTAG TGCCAGA TCCATGC CACCTAG GCTCTAA CGGTTAT GTCCAAG CTACCGA CAAGTTG ATCACGG AAGACTC CGGTATT CGCCATT GTCCATA TCCTGTA TCGTAGC TAGCCGA TGGCTAT TTACTGC GGACATT ATTCAGC ATTCGCG TGAAGCT CACGTAT Loading
launch_universc.sh +3 −0 Original line number Diff line number Diff line Loading @@ -1160,6 +1160,9 @@ else elif [[ "$technology" == "icell8" ]]; then barcodefile=${whitelistdir}/ICELL8_barcode.txt echo "***WARNING: selected barcode file (${barcodefile}) contains barcodes for all wells in ICELL8. valid barcode will be an overestimate***" elif [[ "$technology" == "marsseq-v2" ]]; then barcodefile=${whitelistdir}/MARS-Seq2_barcode.txt echo "***WARNING: selected barcode file (${barcodefile}) contains barcodes for all wells in ICELL8. valid barcode will be an overestimate***" elif [[ "$technology" == "quartz-seq2-384" ]]; then barcodefile=${whitelistdir}/Quartz-Seq2-384_barcode.txt elif [[ "$technology" == "quartz-seq2-1536" ]]; then Loading
whitelists/MARS-Seq2_barcode.txt 0 → 100644 +384 −0 Original line number Diff line number Diff line CTATTCG ACTCAGG ACACGTG TCTTCGA AGCACTG AGTGCGT AACGTTC ATCTGTC GTATGCG ATCTGCA GCAGTAG CAGTACG TGCACAA CGTAACT AGCTCAA ATAACCG TGTCACG TTCCTGA GGATCTA TACCAGT GGAGACT AGCTAGT ACTTGGC TAGCGCA CCTAAGG GGCGATT GCTGAAT GAATAGC ACTGCAG CTTACGG CGCATAT GCCTACA TTCAAGC CTGTGAG CTAGTGC CTTGCAG ATGCCAA CATGCTG CTAAGCG AGCCGAT CGCTTGA GATCACA GTGCTAT AGGCTAG CTACGTA ATAGCGA GTAGTCT CTACAAG CATGAAC TACTAGC GCAACTA AGGCGTT CGCTACA AAGGTAC AAGCCTT CTACAGC CTTAGTG GGCTAGA TTGCCAG CGTTGAA TCGAAGG TATAGGC AACAGCT TCACAAG TGGAGCA CAATCGA TTGCAGA ACCGATC CTGATGG GCTTAGA TACGAGG AACGGTG AGTCTCC GACACTG ATCAGGC CGGATTA TCTCGAA ACGCTAT TCGATAC TGACGGA GCTTCAT GGCACTT CGAGTCT CAGTCAA TGCCTAA CCTGACT TCTGGAG AACTCGT CCTGATG CACAGAT CTTCGAA CGTCAGA TCGACTC CCATGGT TACGTAC TACCGGA AGAGCAT GTCATGC ACGCTTC TCTTAGG TGATGAC GTAAGTC ATCTACG GTACGGT GGTCTTA CGGTCTA TGAGCAG GCATGAT GAGCTAG CATTGTC GTTAGGC CTTAAGC GGTTCAA CAAGGTT ACTGTCC TCTAACG AGTCGAC AACATCG CCATTGC TGCTACT CTGGAAG ATAGCCT GTAACGT CACGAGT AGTACCT CTGTATG CTCATGA AGATCAC GATAGTC GACCTGT CATGAGG CAACGGT CGATATC GAGATCG GCTGACA TTGGTCA GCATCAG TGCTGAG ACGTTGG GACTGTG GACGCTA TCGTGAG ACGGATA CAGCGTA TACGACT CGTGCAT AATGCCG AGCTGTT GCATCGT CATGGAT ATTCCGT CATACAG TATGTCC TACCGAT GCATCCA CGTACTC AGCAGGT CATTGGA GCATGGA CGAAGGT GTAATCC GTCACAC TTCAGTC ACAATCG CATGTGC ATGACGT GGAACCT ACAGGTA TCAGCCT CACAGTA GTCGAGA AGATGCG GCATACT TAGACCA TAGGCAT GTTGACT GGACTTC GCTCATA GTTCAAC ACGATGC TGAGACC GGTCCAT GGTGATC CAATGCG CAGGAAT GCCATTC TGGACAC GTTACCT CTTGTAC ATAGGTC ATGGCTC CAACATG TGATCCG TACTCGA TTAGCGT AACCTTG CACGTCA CCGCATT TGTGACT CGTACGT TGACGTC GCTACCA GGACGAT GACATCC CTAGCTC GATGTAC TCGCCAA ACTCGGT ATGCTAC GGTATCA GCTACTC AGGACAT CTATCGT TGCACTC GATGCTC GACGTAG AGGTTCG GAACCTC AGTGTAC CTCGATC GCTTGTA ATCGTGA CGTATGA GTGTCTA GCTACGT TCACTGA CGCAATC TTGCACC TCTACAG GACCTAA CAGCACT ATGAGCG CGGATGT CTTCAGT TCTCATG TTGCCTA TATCCGC TAACAGC CCGAAGT CGAGTGA CGATGAT AATCACG TACTGAC ACAGCTC TGCACGT GCCATAG CGCATTG GAGACTA AGCTGGA GCTTAAG GCCGTAA ATCCAGG ACACTGG GTTGCAC TCAGTGG GGTATGC GTTGCTA AAGTGCA GCGACAT GTCGTCA ACATCCG GGTCTAG TAATGCC CAACTGA CGAGATT CGTTACG CGACGTT ACATGCT GCAATTG ACGTGGT CAGTTCA TTCATGG CGTCCAA TGAATCC GGCATAC AAGGCTA TATCGCG CGAACTT CTAGACG TCCGCAT GAGCTTC GATCGCT TGTCTCA CCATGAC CATCTGG TACGGTC CGAGTAG GACACCT GAGTTCT TTCAGGA GACGTCT TCACTTG AGATACC CTTGACC GGAATCG CGTGAGT AGTTCGC TACCATG GTTCGGA TGGTACC CTGTCAT GAGTCTT GCTAGAA CGACACT AGGTCTG CGAATTC TAGCGTG ATGTGCC AGTGAGC TAGGTGC AGTTGCA GTGGTAC ATTCCAG ACGTCAA CTGATCA CTGTGGA TAAGGCT CTATGCC GTTAGCG GAGGATC CCGTGTA CTGTCCA TCACAGT TCAACGT CAGTTGT GTCAGTG CTAGAGT TGACACA ATCGCCA ACTCTTG ATTGACG AGCCTTC GAATCTG GTCACTA TAGTGGC AGGAGTC ATGCGCA CTACGAT ATGTCGC GTAACTG AGTCAGT TAGACGC ACCAGTG CATCCGT GTTCATG CAGCGAT ACTACTG TGGATGC GAAGTCC GATTCAG AGGCATG AGATCGA TCTAGTC GCGTTAG TAGAGCC TGCGTAT GGACTAA TGACATG TTAGGCA GAGCTGA ACGGTAG TGCCAGA TCCATGC CACCTAG GCTCTAA CGGTTAT GTCCAAG CTACCGA CAAGTTG ATCACGG AAGACTC CGGTATT CGCCATT GTCCATA TCCTGTA TCGTAGC TAGCCGA TGGCTAT TTACTGC GGACATT ATTCAGC ATTCGCG TGAAGCT CACGTAT
