Commit 2541b65a authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

checking if file converted exists

parent 394f831b

launch_universc.sh

+2 −0
Original line number Diff line number Diff line
@@ -784,6 +784,7 @@ for fq in "${read1[@]}"; do 
        echo "    unzipping and redirecting $fq file..."

        gunzip -c $fq > $to

    elif [ ! keep ]

        then

        echo "    redirecting $fq file..."

        cp $fq $to

    else
@@ -810,6 +811,7 @@ for fq in "${read2[@]}"; do 
        echo "    unzipping and redirecting $fq file..."

        gunzip -c $fq > $to

 elif [ ! keep ]

        then

        echo "    redirecting $fq file..."

        cp $fq $to

    else

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