Loading README.md +13 −0 Original line number Original line Diff line number Diff line Loading @@ -308,6 +308,19 @@ This script will run in bash on any OS (but it has only been tested on Linux Deb with this configuration requires a lot of memory (40Gb) so running on server is recommended. with this configuration requires a lot of memory (40Gb) so running on server is recommended. SGE job modes are supported to run cellranger with multiple threads. SGE job modes are supported to run cellranger with multiple threads. This is required because launch_universc.sh will make changes to the cellranger install to ensure compatibility with the technology running. A local install in you user home directory is needed to make these changes. This ensures that these changes do not affect jobs run by other users and allows launch_universc.sh to change the whitelist and source code as needed. These changes are reversible but mean that only one technology can be run at the same time. You can restore original configurations with: ``` bash launch_universc.sh -t "10x" --setup ``` ##### Local install ##### Local install If cellranger is not already installed we recommend installing it in a directory that If cellranger is not already installed we recommend installing it in a directory that Loading Loading
README.md +13 −0 Original line number Original line Diff line number Diff line Loading @@ -308,6 +308,19 @@ This script will run in bash on any OS (but it has only been tested on Linux Deb with this configuration requires a lot of memory (40Gb) so running on server is recommended. with this configuration requires a lot of memory (40Gb) so running on server is recommended. SGE job modes are supported to run cellranger with multiple threads. SGE job modes are supported to run cellranger with multiple threads. This is required because launch_universc.sh will make changes to the cellranger install to ensure compatibility with the technology running. A local install in you user home directory is needed to make these changes. This ensures that these changes do not affect jobs run by other users and allows launch_universc.sh to change the whitelist and source code as needed. These changes are reversible but mean that only one technology can be run at the same time. You can restore original configurations with: ``` bash launch_universc.sh -t "10x" --setup ``` ##### Local install ##### Local install If cellranger is not already installed we recommend installing it in a directory that If cellranger is not already installed we recommend installing it in a directory that Loading
