Loading launch_universc.sh +3 −1 Original line number Diff line number Diff line Loading @@ -71,7 +71,7 @@ Mandatory arguments to long options are mandatory for short options too. -r, --reference DIR Path of directory containing 10x-compatible reference. -t, --technology PLATFORM Name of technology used to generate data (10x, chromium, nadia, dropseq, icell8, or custom) e.g. custom_16_10 -b, --barcodefile FILE Custom barcode list in plain text -b, --barcodefile FILE Custom barcode list in plain text (with each line containing a barcode) -c, --chemistry CHEM Assay configuration, autodetection is not possible for converted files: 'SC3Pv2' (default), 'SC5P-PE', or 'SC5P-R2' -n, --force-cells NUM Force pipeline to use this number of cells, bypassing the cell detection algorithm. Loading Loading @@ -662,6 +662,8 @@ if [[ ! -z "$barcodefile" ]]; then exit 1 else barcodefile=`readlink -f $barcodefile` #all barcodes upper case sed -i 's/.*/\U&/g' $barcodefile fi else if [[ "$technology" == "10x" ]]; then Loading Loading
launch_universc.sh +3 −1 Original line number Diff line number Diff line Loading @@ -71,7 +71,7 @@ Mandatory arguments to long options are mandatory for short options too. -r, --reference DIR Path of directory containing 10x-compatible reference. -t, --technology PLATFORM Name of technology used to generate data (10x, chromium, nadia, dropseq, icell8, or custom) e.g. custom_16_10 -b, --barcodefile FILE Custom barcode list in plain text -b, --barcodefile FILE Custom barcode list in plain text (with each line containing a barcode) -c, --chemistry CHEM Assay configuration, autodetection is not possible for converted files: 'SC3Pv2' (default), 'SC5P-PE', or 'SC5P-R2' -n, --force-cells NUM Force pipeline to use this number of cells, bypassing the cell detection algorithm. Loading Loading @@ -662,6 +662,8 @@ if [[ ! -z "$barcodefile" ]]; then exit 1 else barcodefile=`readlink -f $barcodefile` #all barcodes upper case sed -i 's/.*/\U&/g' $barcodefile fi else if [[ "$technology" == "10x" ]]; then Loading
