set up testing with GitHub Actions

name: Docker Compose Actions Workflow

on: push

jobs:

  test:

    runs-on: ubuntu-latest

    steps:

      - uses: actions/checkout@v2

      - name: Build the stack

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Call functions

        run: bash /universc/test/test_call.sh

      - name: Test docker container

        run: docker run --network container:webapp-frontend appropriate/curl -s --retry 10 --retry-connrefused http://localhost:5000/

name: Test 10x Genomics

on: push

jobs:

  test:

    runs-on: tomkellygenetics/universc

    steps:

      - uses: actions/checkout@1.0.2

      - name: Build the stack

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Test runnning on 10x

        run:  /universc/test/run_tests_10x.sh

name: Docker Compose Actions Test Call

on: push

jobs:

  test:

    runs-on: tomkellygenetics/cellanger_clean

    steps:

      - uses: actions/checkout@3.0.2

      - name: Build the stack

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Call functions

        run: bash /universc/test/test_call.sh

name: Test DropSeq / Nadia

on: push

jobs:

  test:

    runs-on: tomkellygenetics/universc

    steps:

      - uses: actions/checkout@1.0.2

      - name: Build the stack

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Test runnning on Drop-Seq

        run:  /universc/test/run_tests_dropseq.sh

name: Test ICELL8

on: push

jobs:

  test:

    runs-on: tomkellygenetics/universc

    steps:

      - uses: actions/checkout@1.0.2

      - name: Build the stack

        run: docker-compose up -d

      - name: Status

        run: echo "build complete" 

      - name: Test runnning on ICELL*

        run:  /universc/test/run_tests_10x.sh