Loading README.md +14 −0 Original line number Diff line number Diff line Loading @@ -304,6 +304,20 @@ yay perl-rename The conversion process requires write-access to to the cellranger install directory so an install on your user directory is recommended. You can check where cellranger is installed with: ``` which cellranger ``` If calling the script gives the help menu, launch_universc.sh has sucessfully run with access to the directories that it needs. It will give an error message if the cellranger directory is not writeable. ``` bash launch_universc.sh ``` This script will run in bash on any OS (but it has only been tested on Linux Debian). Running cellranger with this configuration requires a lot of memory (40Gb) so running on server is recommended. SGE job modes are supported to run cellranger with multiple threads. Loading Loading
README.md +14 −0 Original line number Diff line number Diff line Loading @@ -304,6 +304,20 @@ yay perl-rename The conversion process requires write-access to to the cellranger install directory so an install on your user directory is recommended. You can check where cellranger is installed with: ``` which cellranger ``` If calling the script gives the help menu, launch_universc.sh has sucessfully run with access to the directories that it needs. It will give an error message if the cellranger directory is not writeable. ``` bash launch_universc.sh ``` This script will run in bash on any OS (but it has only been tested on Linux Debian). Running cellranger with this configuration requires a lot of memory (40Gb) so running on server is recommended. SGE job modes are supported to run cellranger with multiple threads. Loading
