correct set up for version 3 (10a8c94e) · Commits · github_fork / Universc

launch_universc.sh

+3 −3

Original line number	Diff line number	Diff line
		@@ -362,7 +362,7 @@ if [[ $setup == "true" ]]
		gzip 3M-february-2018.txt.backup
		fi
		#combine 10x and Nadia barcodes
		gzip -k nadia_barcode.txt
		gzip -k -f nadia_barcode.txt
		zcat nadia_barcode.txt 3M-february-2018.txt.backup > 3M-february-2018.txt
		gzip -f 3M-february-2018.txt
		echo "whitelist converted for Nadia compatibility with version 3 kit"
		@@ -399,7 +399,7 @@ if [[ $setup == "true" ]]
		echo "restore 10x barcodes"
		cp 3M-february-2018.txt.backup.gz 3M-february-2018.txt.gz
		fi
		gunzip -k 3M-february-2018.txt.gz
		gunzip -k -f 3M-february-2018.txt.gz
		if [ ! -f 3M-february-2018.txt.backup.gz ]
		then
		echo "backup of version 3 whitelist"
		@@ -407,7 +407,7 @@ if [[ $setup == "true" ]]
		gzip 3M-february-2018.txt.backup
		fi
		#combine 10x and Nadia barcodes
		gzip -k iCELL8_barcode.txt
		gzip -k -f iCELL8_barcode.txt
		zcat iCELL8_barcode.txt 3M-february-2018.txt.backup > 3M-february-2018.txt
		gzip -f 3M-february-2018.txt
		echo "whitelist converted for iCELL8 compatibility with version 3 kit"