Commit 0c16416a authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

fix keep

parent 1da8c2ce
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+6 −1
Original line number Diff line number Diff line
@@ -737,6 +737,11 @@ done

LANE=$(echo "${LANE[@]}" | tr ' ' '\n' | sort -u | tr '\n' ',' | sed 's/,$//')

if [[ $verbose == "true" ]]
    then
    echo "keep: $keep"
fi

#create directory of modified files
echo "    creating a folder for all cellranger input files..."
crIN="cellranger"