Commit 0a63a78f authored by TomKellyGenetics's avatar TomKellyGenetics
Browse files

update convert

parent 9634fc4d
Loading
Loading
Loading
Loading
+3 −2
Original line number Diff line number Diff line
@@ -541,7 +541,8 @@ if [[ "$technology" != "10x" ]] \
&& [[ "$technology" != "smart-seq"* ]]\
&& [[ "$technology" != "surecell" ]]; then
    if [[ "$technology" != "custom"* ]]; then
        echo "Error: option -t needs to be 10x, nadia, icell8, or custom_<barcode>_<UMI>"
        echo "Error: option -t needs to be a technology listed or custom_<barcode>_<UMI>"
        echo "$help"
        exit 1
    else
        custom=`echo $technology | grep -o "_" | wc -l`
@@ -1348,7 +1349,7 @@ else
    fi

    #remove adapter from SCRB-Seq
    if [[ "$technology" == "scrbseq" ]];
    if [[ "$technology" == "scrbseq" ]]; then
        for convFile in "${convFiles[@]}"; do
            #remove adapters
            sed -E '