Loading launch_universc.sh +10 −10 Original line number Diff line number Diff line Loading @@ -509,23 +509,23 @@ for i in ${!read1[@]} do read=${read1[$i]} echo " checking file format for $read1 ..." if [ -f $read ] if [ -f $read ] && [ ! -h $read ] then echo $read elif [ -f ${read}.fq ] elif [ -f ${read}.fq ] && [ ! -h $read ] then read=${read}.fq echo $read elif [ -f ${read}.fastq ] elif [ -f ${read}.fastq ] && [ ! -h $read ] then read=${read}.fastq echo $read elif [ -f ${read}.fq.gz ] elif [ -f ${read}.fq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fq.gz read=${read}.fq echo $read elif [ -f ${read}.fastq.gz ] elif [ -f ${read}.fastq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fastq.gz read=${read}.fastq Loading @@ -540,23 +540,23 @@ for i in ${!read2[@]} do read=${read2[$i]} echo " checking file format for $read2 ..." if [ -f $read ] if [ -f $read ] || [ ! -h $read ] then echo $read elif [ -f ${read}.fq ] elif [ -f ${read}.fq ] && [ ! -h $read ] then read=${read}.fq echo $read elif [ -f ${read}.fastq ] elif [ -f ${read}.fastq ] && [ ! -h $read ] then read=${read}.fastq echo $read elif [ -f ${read}.fq.gz ] elif [ -f ${read}.fq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fq.gz read=${read}.fq echo $read elif [ -f ${read}.fastq.gz ] elif [ -f ${read}.fastq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fastq.gz read=${read}.fastq Loading Loading
launch_universc.sh +10 −10 Original line number Diff line number Diff line Loading @@ -509,23 +509,23 @@ for i in ${!read1[@]} do read=${read1[$i]} echo " checking file format for $read1 ..." if [ -f $read ] if [ -f $read ] && [ ! -h $read ] then echo $read elif [ -f ${read}.fq ] elif [ -f ${read}.fq ] && [ ! -h $read ] then read=${read}.fq echo $read elif [ -f ${read}.fastq ] elif [ -f ${read}.fastq ] && [ ! -h $read ] then read=${read}.fastq echo $read elif [ -f ${read}.fq.gz ] elif [ -f ${read}.fq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fq.gz read=${read}.fq echo $read elif [ -f ${read}.fastq.gz ] elif [ -f ${read}.fastq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fastq.gz read=${read}.fastq Loading @@ -540,23 +540,23 @@ for i in ${!read2[@]} do read=${read2[$i]} echo " checking file format for $read2 ..." if [ -f $read ] if [ -f $read ] || [ ! -h $read ] then echo $read elif [ -f ${read}.fq ] elif [ -f ${read}.fq ] && [ ! -h $read ] then read=${read}.fq echo $read elif [ -f ${read}.fastq ] elif [ -f ${read}.fastq ] && [ ! -h $read ] then read=${read}.fastq echo $read elif [ -f ${read}.fq.gz ] elif [ -f ${read}.fq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fq.gz read=${read}.fq echo $read elif [ -f ${read}.fastq.gz ] elif [ -f ${read}.fastq.gz ] && [ ! -h $read ] then gunzip -k ${read}.fastq.gz read=${read}.fastq Loading
