update metadata and permissons (02210672) · Commits · github_fork / Universc

README.md

+1 −1

Original line number	Diff line number	Diff line
		@@ -6,7 +6,7 @@ affiliations:
		index: 1
		- name: "RIKEN Center for Sustainable Resource Sciences, Suehiro-cho-1-7-22, Tsurumi Ward, Yokohama, Kanagawa 230-0045, Japan"
		index: 2
		date: "Thursday 02 September 2021"
		date: "Sunday 26 September 2021"
		output:
		prettydoc::html_pretty:
		theme: cayman

+3 −3

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		version=1.1.5
		old_version=1.1.4
		version=1.1.6
		old_version=1.1.5
		sed -i "s/$old_version/$version/g" md html launch_universc.sh .version man/sh inst/
		#R -e "knitr::knit('README.Rmd')"; pandoc -f markdown -t html README.md > README.html
		R -e "knitr::knit('README.Rmd')"; pandoc -f markdown -t html README.md > README.html
		echo "updating GitHub version $version"
		git add -u
		git commit -m "update documentation for $version"

100644 → 100755

+0 −0

File mode changed from 100644 to 100755.

100644 → 100755

+0 −17

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		@@ -29,7 +29,6 @@ my $name = "";

		#making the options into external arguments.
		GetOptions (
		<<<<<<< HEAD
		'genome=s' => \$genome,
		'annotation=s' => \$annotation,
		'name=s' => \$name
		@@ -44,22 +43,6 @@ elsif (!$annotation){
		}
		elsif (!$name) {
		die "USAGE: option --name <reference name> is required.\n";
		=======
		'genome=s' => \$genome,
		'annotation=s' => \$annotation,
		'name=s' => \$name
		);

		#checking for sequence type
		if (!$genome) {
		die "USAGE: option --genome <FASTA file> is required.\n";
		}
		elsif (!$annotation){
		die "USAGE: option --annotation <GTF file> is required.\n";
		}
		elsif (!$name) {
		die "USAGE: option --name <reference name> is required.\n";
		>>>>>>> 4957925f3efbae4b8c2328ab7f351fc66469be60
		}

		print "check complete.\n\n";