Loading launch_universc.sh +9 −2 Original line number Diff line number Diff line Loading @@ -3,7 +3,7 @@ install=false ######convert version##### convertversion="0.3.0.90004" convertversion="0.3.0.90005" ########## Loading Loading @@ -67,6 +67,8 @@ Mandatory arguments to long options are mandatory for short options too. -R2, --read2 FILE Read 2 FASTQ file to pass to cellranger -f, --file NAME Path and the name of FASTQ files to pass to cellranger (prefix before R1 or R2) e.g. /path/to/files/Example_S1_L001 --trim run adapter and quality trimming on R2 files prior to running cellranger -i, --id ID A unique run id, used to name output folder -d, --description TEXT Sample description to embed in output files. -r, --reference DIR Path of directory containing 10x-compatible reference. Loading Loading @@ -203,6 +205,11 @@ for op in "$@"; do exit 1 fi ;; --trim) trim=true next=false shift ;; -i|--id) shift if [[ "$1" != "" ]]; then Loading Loading
launch_universc.sh +9 −2 Original line number Diff line number Diff line Loading @@ -3,7 +3,7 @@ install=false ######convert version##### convertversion="0.3.0.90004" convertversion="0.3.0.90005" ########## Loading Loading @@ -67,6 +67,8 @@ Mandatory arguments to long options are mandatory for short options too. -R2, --read2 FILE Read 2 FASTQ file to pass to cellranger -f, --file NAME Path and the name of FASTQ files to pass to cellranger (prefix before R1 or R2) e.g. /path/to/files/Example_S1_L001 --trim run adapter and quality trimming on R2 files prior to running cellranger -i, --id ID A unique run id, used to name output folder -d, --description TEXT Sample description to embed in output files. -r, --reference DIR Path of directory containing 10x-compatible reference. Loading Loading @@ -203,6 +205,11 @@ for op in "$@"; do exit 1 fi ;; --trim) trim=true next=false shift ;; -i|--id) shift if [[ "$1" != "" ]]; then Loading
