update

Makefile

Package: scplot

Title: What the Package Does (One Line, Title Case)

Version: 0.0.0.9000

Authors@R: 

    person("First", "Last", , "first.last@example.com", role = c("aut", "cre"),

           comment = c(ORCID = "YOUR-ORCID-ID"))

Description: What the package does (one paragraph).

License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a

    license

Title: Visualizing single cell data

Version: 0.0.1

Authors@R: c(

       person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),

       person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "aut", comment = c(ORCID="0000-0003-3513-5362"))

       )

Description: Useful functions to visualize single cell data.

Imports:

  dplyr,

  ggplot2,

  rlang,

  scattermore,

  SeuratObject,

  tidydr,

  tidyr,

  utils

Suggests:

  knitr,

  rmarkdown,

  prettydoc

VignetteBuilder: knitr

ByteCompile: true

License: Artistic-2.0

Encoding: UTF-8

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.2.1

PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)

PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)

PKGSRC  := $(shell basename `pwd`)

all: rd check clean

alldocs: rd readme mkdocs

rd:

	Rscript -e 'roxygen2::roxygenise(".")'

readme:

	Rscript -e 'rmarkdown::render("README.Rmd")'

readme2:

	Rscript -e 'rmarkdown::render("README.Rmd", "html_document")'

build:

	cd ..;\

	R CMD build $(PKGSRC)

build2:

	cd ..;\

	R CMD build --no-build-vignettes $(PKGSRC)

install:

	cd ..;\

	R CMD INSTALL $(PKGNAME)_$(PKGVERS).tar.gz

check: build

	cd ..;\

	Rscript -e 'rcmdcheck::rcmdcheck("$(PKGNAME)_$(PKGVERS).tar.gz")'

check2: build

	cd ..;\

	R CMD check $(PKGNAME)_$(PKGVERS).tar.gz

bioccheck:

	cd ..;\

	Rscript -e 'BiocCheck::BiocCheck("$(PKGNAME)_$(PKGVERS).tar.gz")'

clean:

	cd ..;\

	$(RM) -r $(PKGNAME).Rcheck/

# Generated by roxygen2: do not edit by hand

S3method(ggplot_add,sc_dim_geom_label)

export(sc_dim)

export(sc_dim_geom_feature)

export(sc_dim_geom_label)

export(sc_feature)

export(sc_geom_point)

export(sc_violin)

importFrom(SeuratObject,FetchData)

importFrom(ggplot2,aes_string)

importFrom(ggplot2,element_blank)

importFrom(ggplot2,element_text)

importFrom(ggplot2,facet_wrap)

importFrom(ggplot2,geom_violin)

importFrom(ggplot2,ggplot)

importFrom(ggplot2,ggplot_add)

importFrom(ggplot2,ggtitle)

importFrom(ggplot2,rel)

importFrom(ggplot2,scale_color_gradient)

importFrom(ggplot2,theme)

importFrom(ggplot2,theme_bw)

importFrom(rlang,.data)

importFrom(scattermore,geom_scattermore)

importFrom(tidydr,theme_dr)

importFrom(tidyr,pivot_longer)

importFrom(utils,modifyList)

# scplot 0.0.1

+ `sc_dim`, `sc_dim_geom_feature`, `sc_dim_geom_label`, `sc_feature`, `sc_geom_point` and `sc_violin` functions (2022-11-09, Wed)