Commit 43cd3057 authored by Korsunskiy's avatar Korsunskiy
Browse files

removed extra dependencies

parent ade2b51d
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@@ -33,4 +33,3 @@ Suggests:
    SingleCellExperiment,
    SummarizedExperiment
NeedsCompilation: yes
VignetteBuilder: knitr
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@@ -12,7 +12,6 @@ importClassesFrom(Matrix,dgTMatrix)
importClassesFrom(Matrix,dgeMatrix)
importFrom(Matrix,Matrix)
importFrom(dplyr,select)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,is)
importFrom(stats,p.adjust)

R/%

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        y <- Seurat::FetchData(X, group_by) %>% unlist %>% as.character()
    } else if (!group_by %in% names(SummarizedExperiment::colData(X))) {
        idx_use <- which(y %in% intersect(groups_use, y))
    group_pct <- sweep(group_nnz, 1, as.numeric(table(y)), "/") %>% t()
    group_pct_out <- -group_nnz %>%
        sweep(2, colSums(group_nnz) , "+") %>% 
        sweep(1, as.numeric(length(y) - table(y)), "/") %>% t()
    group_means <- sweep(group_sums, 1, as.numeric(table(y)), "/") %>% t()
    res <- Reduce(cbind, lapply(wide_res, as.numeric)) %>% data.frame()
    }) %>% unlist
    usigma <- sqrt(matrix(n1n2, ncol = 1) %*% matrix(rhs, nrow = 1))
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@@ -8,7 +8,6 @@
#' @import Rcpp
#' @importClassesFrom Matrix dgCMatrix dgTMatrix dgeMatrix TsparseMatrix
#' @importFrom Matrix Matrix
#' @importFrom magrittr %>%
#' @importFrom dplyr select
#' @importFrom stats pnorm p.adjust
#' @importFrom methods is as